miRNA display CGI


Results 21 - 40 of 167 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28844 3' -54.3 NC_006146.1 + 24634 0.7 0.857964
Target:  5'- gGGCCGCCAcGucGCGCGUCCaccGACu -3'
miRNA:   3'- -CCGGUGGUuCu-UGCGCAGGgacUUGc -5'
28844 3' -54.3 NC_006146.1 + 25152 0.71 0.790724
Target:  5'- cGGCCGgacCCGAGGAgGCG--CCUGGGCGa -3'
miRNA:   3'- -CCGGU---GGUUCUUgCGCagGGACUUGC- -5'
28844 3' -54.3 NC_006146.1 + 25178 0.67 0.955638
Target:  5'- cGGCCAgagcgacaUCAAGcuGACGCGcuccugcUCCCaGAGCGg -3'
miRNA:   3'- -CCGGU--------GGUUC--UUGCGC-------AGGGaCUUGC- -5'
28844 3' -54.3 NC_006146.1 + 28230 0.71 0.790724
Target:  5'- cGGCCGgacCCGAGGAgGCG--CCUGGGCGa -3'
miRNA:   3'- -CCGGU---GGUUCUUgCGCagGGACUUGC- -5'
28844 3' -54.3 NC_006146.1 + 30403 0.66 0.96644
Target:  5'- gGGCCGCC-AGGugGCG-CaaaCUGAGa- -3'
miRNA:   3'- -CCGGUGGuUCUugCGCaGg--GACUUgc -5'
28844 3' -54.3 NC_006146.1 + 32933 0.68 0.911836
Target:  5'- cGGCCcCCGGGAGgcccggcCGCGauccUCCCccgUGAACGg -3'
miRNA:   3'- -CCGGuGGUUCUU-------GCGC----AGGG---ACUUGC- -5'
28844 3' -54.3 NC_006146.1 + 34241 0.66 0.971502
Target:  5'- aGGCCGCCGcaAGGACGCcgggccggcuggggGUugugcaccCCCcGAGCGu -3'
miRNA:   3'- -CCGGUGGU--UCUUGCG--------------CA--------GGGaCUUGC- -5'
28844 3' -54.3 NC_006146.1 + 37609 0.69 0.880042
Target:  5'- uGGCCuCgAAGAugGCGUCCUcaucGACGu -3'
miRNA:   3'- -CCGGuGgUUCUugCGCAGGGac--UUGC- -5'
28844 3' -54.3 NC_006146.1 + 40213 0.66 0.95971
Target:  5'- -uCCGCCcAGAucuCGCGcCCCUGAuuGCa -3'
miRNA:   3'- ccGGUGGuUCUu--GCGCaGGGACU--UGc -5'
28844 3' -54.3 NC_006146.1 + 40932 0.69 0.865533
Target:  5'- aGGCCGCCAacgcccAGAAgGCGUCgCgugucaUGGACa -3'
miRNA:   3'- -CCGGUGGU------UCUUgCGCAGgG------ACUUGc -5'
28844 3' -54.3 NC_006146.1 + 41344 0.72 0.766721
Target:  5'- -aCCACCAGGGgguccaguuggagacACGUGUCCuCUGGugGg -3'
miRNA:   3'- ccGGUGGUUCU---------------UGCGCAGG-GACUugC- -5'
28844 3' -54.3 NC_006146.1 + 42111 0.71 0.79971
Target:  5'- cGGCgCACgacuaCGAGGGCcucuggcacgccGUGUCCCUGAGCGu -3'
miRNA:   3'- -CCG-GUG-----GUUCUUG------------CGCAGGGACUUGC- -5'
28844 3' -54.3 NC_006146.1 + 42402 0.68 0.918211
Target:  5'- gGGCCACCcc-GACGcCGUCCUcGAagGCGa -3'
miRNA:   3'- -CCGGUGGuucUUGC-GCAGGGaCU--UGC- -5'
28844 3' -54.3 NC_006146.1 + 42852 0.75 0.572964
Target:  5'- gGGCCGCCAGGcccACGCGcagguUCCaCUGGugGg -3'
miRNA:   3'- -CCGGUGGUUCu--UGCGC-----AGG-GACUugC- -5'
28844 3' -54.3 NC_006146.1 + 43532 0.72 0.743851
Target:  5'- cGGCCACCAucAGuGGgGUGUCCgUGggUGa -3'
miRNA:   3'- -CCGGUGGU--UC-UUgCGCAGGgACuuGC- -5'
28844 3' -54.3 NC_006146.1 + 43680 0.67 0.943591
Target:  5'- gGGUCACgAagcgagucAGGACGCGgcgagCCUGGGCGa -3'
miRNA:   3'- -CCGGUGgU--------UCUUGCGCag---GGACUUGC- -5'
28844 3' -54.3 NC_006146.1 + 44035 0.68 0.906409
Target:  5'- uGGCUcaaaGCCGGGAACucgaccuggaGCGUCCUcaggGAACGc -3'
miRNA:   3'- -CCGG----UGGUUCUUG----------CGCAGGGa---CUUGC- -5'
28844 3' -54.3 NC_006146.1 + 44943 0.68 0.912427
Target:  5'- cGUgGCCAGGGGCGCGgggaggCCCcgggGGACu -3'
miRNA:   3'- cCGgUGGUUCUUGCGCa-----GGGa---CUUGc -5'
28844 3' -54.3 NC_006146.1 + 45678 0.68 0.912427
Target:  5'- -uCCGCCAGGGA-GCGgaagggCUCUGAGCGc -3'
miRNA:   3'- ccGGUGGUUCUUgCGCa-----GGGACUUGC- -5'
28844 3' -54.3 NC_006146.1 + 45823 0.78 0.433389
Target:  5'- cGGCCGCCucgaagacggagacgGGGAugGCGUCCCccGAGCc -3'
miRNA:   3'- -CCGGUGG---------------UUCUugCGCAGGGa-CUUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.