miRNA display CGI


Results 1 - 20 of 167 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28844 3' -54.3 NC_006146.1 + 570 0.67 0.93365
Target:  5'- uGGCCucccaggagagggGCCGGGGGCGCGgCCCg--GCGc -3'
miRNA:   3'- -CCGG-------------UGGUUCUUGCGCaGGGacuUGC- -5'
28844 3' -54.3 NC_006146.1 + 1501 0.67 0.93365
Target:  5'- uGGCCucccaggagagggGCCGGGGGCGCGgCCCg--GCGc -3'
miRNA:   3'- -CCGG-------------UGGUUCUUGCGCaGGGacuUGC- -5'
28844 3' -54.3 NC_006146.1 + 2433 0.67 0.93365
Target:  5'- uGGCCucccaggagagggGCCGGGGGCGCGgCCCg--GCGc -3'
miRNA:   3'- -CCGG-------------UGGUUCUUGCGCaGGGacuUGC- -5'
28844 3' -54.3 NC_006146.1 + 3365 0.67 0.93365
Target:  5'- uGGCCucccaggagagggGCCGGGGGCGCGgCCCg--GCGc -3'
miRNA:   3'- -CCGG-------------UGGUUCUUGCGCaGGGacuUGC- -5'
28844 3' -54.3 NC_006146.1 + 4122 0.73 0.694561
Target:  5'- cGGCgGCCAGcGAcuacGCGCGUgaCCUGGGCGu -3'
miRNA:   3'- -CCGgUGGUU-CU----UGCGCAg-GGACUUGC- -5'
28844 3' -54.3 NC_006146.1 + 5091 0.66 0.972334
Target:  5'- cGCgGCCAGGGACGCccCCCU-AGCc -3'
miRNA:   3'- cCGgUGGUUCUUGCGcaGGGAcUUGc -5'
28844 3' -54.3 NC_006146.1 + 5180 0.69 0.880042
Target:  5'- uGGCCAggcCCGAG-ACGUuuUCCCUGGGCc -3'
miRNA:   3'- -CCGGU---GGUUCuUGCGc-AGGGACUUGc -5'
28844 3' -54.3 NC_006146.1 + 10534 0.66 0.969489
Target:  5'- cGGCCuGCCAAGGGCGCugagacgccaGUUCCccgugacaUGGACc -3'
miRNA:   3'- -CCGG-UGGUUCUUGCG----------CAGGG--------ACUUGc -5'
28844 3' -54.3 NC_006146.1 + 10581 0.66 0.963182
Target:  5'- uGGCCAgCcuGAGCGUcUUCCUGAAa- -3'
miRNA:   3'- -CCGGUgGuuCUUGCGcAGGGACUUgc -5'
28844 3' -54.3 NC_006146.1 + 11440 0.69 0.886971
Target:  5'- aGGUgGCCAAGGugGCGgCCCUcAAgGa -3'
miRNA:   3'- -CCGgUGGUUCUugCGCaGGGAcUUgC- -5'
28844 3' -54.3 NC_006146.1 + 12082 0.66 0.963182
Target:  5'- gGGCCggGCCccGGcCGUGUgCCUGAACa -3'
miRNA:   3'- -CCGG--UGGuuCUuGCGCAgGGACUUGc -5'
28844 3' -54.3 NC_006146.1 + 12840 0.7 0.857964
Target:  5'- cGGCCGgacCCGAGGAgGCG-CCUgGGGCGa -3'
miRNA:   3'- -CCGGU---GGUUCUUgCGCaGGGaCUUGC- -5'
28844 3' -54.3 NC_006146.1 + 14134 0.66 0.96644
Target:  5'- cGGCCuacaGCCAGGuguACGCGcuggCCguggagCUGAGCGu -3'
miRNA:   3'- -CCGG----UGGUUCu--UGCGCa---GG------GACUUGC- -5'
28844 3' -54.3 NC_006146.1 + 15919 0.71 0.790724
Target:  5'- cGGCCGgacCCGAGGAgGCG--CCUGGGCGa -3'
miRNA:   3'- -CCGGU---GGUUCUUgCGCagGGACUUGC- -5'
28844 3' -54.3 NC_006146.1 + 15988 0.66 0.96644
Target:  5'- cGCCugCGAagggcGGACGCGgucagCCC-GGGCGa -3'
miRNA:   3'- cCGGugGUU-----CUUGCGCa----GGGaCUUGC- -5'
28844 3' -54.3 NC_006146.1 + 18996 0.71 0.790724
Target:  5'- cGGCCGgacCCGAGGAgGCG--CCUGGGCGa -3'
miRNA:   3'- -CCGGU---GGUUCUUgCGCagGGACUUGC- -5'
28844 3' -54.3 NC_006146.1 + 20731 0.69 0.900158
Target:  5'- cGGCCugCGAGGAccCGCGcCaaaagaccauCCUGGACa -3'
miRNA:   3'- -CCGGugGUUCUU--GCGCaG----------GGACUUGc -5'
28844 3' -54.3 NC_006146.1 + 22074 0.71 0.790724
Target:  5'- cGGCCGgacCCGAGGAgGCG--CCUGGGCGa -3'
miRNA:   3'- -CCGGU---GGUUCUUgCGCagGGACUUGC- -5'
28844 3' -54.3 NC_006146.1 + 23768 0.68 0.92376
Target:  5'- cGCgGCCGAGAauggcggccuGCGCGUCUggggcccgCUGAGCc -3'
miRNA:   3'- cCGgUGGUUCU----------UGCGCAGG--------GACUUGc -5'
28844 3' -54.3 NC_006146.1 + 24091 0.69 0.886971
Target:  5'- cGGCCucGCCuGGGACGCGggUCgaGGGCGg -3'
miRNA:   3'- -CCGG--UGGuUCUUGCGCa-GGgaCUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.