miRNA display CGI


Results 1 - 20 of 167 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28844 3' -54.3 NC_006146.1 + 170451 0.71 0.808545
Target:  5'- uGCCGggggacCCGGGGGCGUGUCCCgcgacccgagGGGCGa -3'
miRNA:   3'- cCGGU------GGUUCUUGCGCAGGGa---------CUUGC- -5'
28844 3' -54.3 NC_006146.1 + 170206 0.67 0.956019
Target:  5'- gGGCCugGCgGGGGccaGCGCGgggUCCCgGGGCGg -3'
miRNA:   3'- -CCGG--UGgUUCU---UGCGC---AGGGaCUUGC- -5'
28844 3' -54.3 NC_006146.1 + 169520 0.71 0.808545
Target:  5'- uGCCGggggacCCGGGGGCGUGUCCCgcgacccgagGGGCGa -3'
miRNA:   3'- cCGGU------GGUUCUUGCGCAGGGa---------CUUGC- -5'
28844 3' -54.3 NC_006146.1 + 169275 0.67 0.956019
Target:  5'- gGGCCugGCgGGGGccaGCGCGgggUCCCgGGGCGg -3'
miRNA:   3'- -CCGG--UGgUUCU---UGCGC---AGGGaCUUGC- -5'
28844 3' -54.3 NC_006146.1 + 168588 0.71 0.808545
Target:  5'- uGCCGggggacCCGGGGGCGUGUCCCgcgacccgagGGGCGa -3'
miRNA:   3'- cCGGU------GGUUCUUGCGCAGGGa---------CUUGC- -5'
28844 3' -54.3 NC_006146.1 + 168343 0.67 0.956019
Target:  5'- gGGCCugGCgGGGGccaGCGCGgggUCCCgGGGCGg -3'
miRNA:   3'- -CCGG--UGgUUCU---UGCGC---AGGGaCUUGC- -5'
28844 3' -54.3 NC_006146.1 + 167656 0.72 0.772337
Target:  5'- uGCCGggggcCCGGGGGCGUGUCCCgcgacccgagGGGCGa -3'
miRNA:   3'- cCGGU-----GGUUCUUGCGCAGGGa---------CUUGC- -5'
28844 3' -54.3 NC_006146.1 + 167411 0.67 0.956019
Target:  5'- gGGCCugGCgGGGGccaGCGCGgggUCCCgGGGCGg -3'
miRNA:   3'- -CCGG--UGgUUCU---UGCGC---AGGGaCUUGC- -5'
28844 3' -54.3 NC_006146.1 + 165936 0.72 0.762953
Target:  5'- aGGCCGCCAGGAGgcucuCGUGgcCCCUGGucccCGg -3'
miRNA:   3'- -CCGGUGGUUCUU-----GCGCa-GGGACUu---GC- -5'
28844 3' -54.3 NC_006146.1 + 165849 0.71 0.814637
Target:  5'- cGGCCAgCCccgcauacuugucaAAGAACGUGgucUCCCUGAcgucGCGg -3'
miRNA:   3'- -CCGGU-GG--------------UUCUUGCGC---AGGGACU----UGC- -5'
28844 3' -54.3 NC_006146.1 + 165806 0.82 0.27605
Target:  5'- cGGCCgGCUAGGGGgGCGUCCCUGGccGCGu -3'
miRNA:   3'- -CCGG-UGGUUCUUgCGCAGGGACU--UGC- -5'
28844 3' -54.3 NC_006146.1 + 165736 0.72 0.73415
Target:  5'- gGGCCugGCCAGGAACuucagcaggGCGUCUCgcaGGGCGg -3'
miRNA:   3'- -CCGG--UGGUUCUUG---------CGCAGGGa--CUUGC- -5'
28844 3' -54.3 NC_006146.1 + 159721 0.76 0.55195
Target:  5'- uGGCCACCAGGuuccccccguagaGGCGC-UCCUUGAAUGc -3'
miRNA:   3'- -CCGGUGGUUC-------------UUGCGcAGGGACUUGC- -5'
28844 3' -54.3 NC_006146.1 + 158489 0.67 0.934147
Target:  5'- uGGaCCACCucGGcguccaccgccGCGUccacGUCCCUGAACa -3'
miRNA:   3'- -CC-GGUGGuuCU-----------UGCG----CAGGGACUUGc -5'
28844 3' -54.3 NC_006146.1 + 157698 0.71 0.808545
Target:  5'- cGGCUgaacCCGAGGAgGCG-CCCgGAGCGa -3'
miRNA:   3'- -CCGGu---GGUUCUUgCGCaGGGaCUUGC- -5'
28844 3' -54.3 NC_006146.1 + 157695 0.74 0.643975
Target:  5'- aGGCCuuCAGGAugGCGUUgUUGAGCc -3'
miRNA:   3'- -CCGGugGUUCUugCGCAGgGACUUGc -5'
28844 3' -54.3 NC_006146.1 + 157271 0.69 0.879336
Target:  5'- aGGCUGCUggGGACcagggccuccuggGCGUCUCUGggUc -3'
miRNA:   3'- -CCGGUGGuuCUUG-------------CGCAGGGACuuGc -5'
28844 3' -54.3 NC_006146.1 + 157057 0.66 0.96644
Target:  5'- gGGCCGCCGGGGucccuccgGC-CGg-CCUGAugGa -3'
miRNA:   3'- -CCGGUGGUUCU--------UGcGCagGGACUugC- -5'
28844 3' -54.3 NC_006146.1 + 156216 0.66 0.95971
Target:  5'- aGGUgGCCuGGcAACGCGaacccCCCUGGGCc -3'
miRNA:   3'- -CCGgUGGuUC-UUGCGCa----GGGACUUGc -5'
28844 3' -54.3 NC_006146.1 + 156205 0.68 0.92376
Target:  5'- gGGaCCGCCAGGugguugcaggaGACGCGggCCCccucggccgUGGACGg -3'
miRNA:   3'- -CC-GGUGGUUC-----------UUGCGCa-GGG---------ACUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.