miRNA display CGI


Results 1 - 20 of 167 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28844 3' -54.3 NC_006146.1 + 128869 0.66 0.972334
Target:  5'- gGGCCACgAAGAggGgGCGgaggcgggCCC-GAACGc -3'
miRNA:   3'- -CCGGUGgUUCU--UgCGCa-------GGGaCUUGC- -5'
28844 3' -54.3 NC_006146.1 + 126010 0.66 0.96644
Target:  5'- cGGCCGCuCAAGGuaccauCGCGagCCCagGGGCu -3'
miRNA:   3'- -CCGGUG-GUUCUu-----GCGCa-GGGa-CUUGc -5'
28844 3' -54.3 NC_006146.1 + 15988 0.66 0.96644
Target:  5'- cGCCugCGAagggcGGACGCGgucagCCC-GGGCGa -3'
miRNA:   3'- cCGGugGUU-----CUUGCGCa----GGGaCUUGC- -5'
28844 3' -54.3 NC_006146.1 + 14134 0.66 0.96644
Target:  5'- cGGCCuacaGCCAGGuguACGCGcuggCCguggagCUGAGCGu -3'
miRNA:   3'- -CCGG----UGGUUCu--UGCGCa---GG------GACUUGC- -5'
28844 3' -54.3 NC_006146.1 + 12082 0.66 0.963182
Target:  5'- gGGCCggGCCccGGcCGUGUgCCUGAACa -3'
miRNA:   3'- -CCGG--UGGuuCUuGCGCAgGGACUUGc -5'
28844 3' -54.3 NC_006146.1 + 10581 0.66 0.963182
Target:  5'- uGGCCAgCcuGAGCGUcUUCCUGAAa- -3'
miRNA:   3'- -CCGGUgGuuCUUGCGcAGGGACUUgc -5'
28844 3' -54.3 NC_006146.1 + 111633 0.66 0.95971
Target:  5'- aGGuCCGCgAAG-ACGuCGgccaggCCCUGAACa -3'
miRNA:   3'- -CC-GGUGgUUCuUGC-GCa-----GGGACUUGc -5'
28844 3' -54.3 NC_006146.1 + 156216 0.66 0.95971
Target:  5'- aGGUgGCCuGGcAACGCGaacccCCCUGGGCc -3'
miRNA:   3'- -CCGgUGGuUC-UUGCGCa----GGGACUUGc -5'
28844 3' -54.3 NC_006146.1 + 153138 0.66 0.95971
Target:  5'- aGGUgGCCuGGcAACGCGaacccCCCUGGGCc -3'
miRNA:   3'- -CCGgUGGuUC-UUGCGCa----GGGACUUGc -5'
28844 3' -54.3 NC_006146.1 + 126801 0.66 0.96644
Target:  5'- cGG-CGCCGAGcGCGCGgCCCgaggugGAACc -3'
miRNA:   3'- -CCgGUGGUUCuUGCGCaGGGa-----CUUGc -5'
28844 3' -54.3 NC_006146.1 + 130683 0.66 0.96644
Target:  5'- cGGUgcaAUCAGGGGCGCGagaUCUGGGCGg -3'
miRNA:   3'- -CCGg--UGGUUCUUGCGCag-GGACUUGC- -5'
28844 3' -54.3 NC_006146.1 + 141668 0.66 0.96644
Target:  5'- gGGCCGCCGGGGucccuccgGC-CGg-CCUGAugGa -3'
miRNA:   3'- -CCGGUGGUUCU--------UGcGCagGGACUugC- -5'
28844 3' -54.3 NC_006146.1 + 104846 0.66 0.969489
Target:  5'- uGGCCGgggCAGGAACuuuGCGUgCCUGAGg- -3'
miRNA:   3'- -CCGGUg--GUUCUUG---CGCAgGGACUUgc -5'
28844 3' -54.3 NC_006146.1 + 103581 0.66 0.969489
Target:  5'- gGGCCuggGCCGGGcucAGCGCGgacguggCCCggGAGCu -3'
miRNA:   3'- -CCGG---UGGUUC---UUGCGCa------GGGa-CUUGc -5'
28844 3' -54.3 NC_006146.1 + 10534 0.66 0.969489
Target:  5'- cGGCCuGCCAAGGGCGCugagacgccaGUUCCccgugacaUGGACc -3'
miRNA:   3'- -CCGG-UGGUUCUUGCG----------CAGGG--------ACUUGc -5'
28844 3' -54.3 NC_006146.1 + 157057 0.66 0.96644
Target:  5'- gGGCCGCCGGGGucccuccgGC-CGg-CCUGAugGa -3'
miRNA:   3'- -CCGGUGGUUCU--------UGcGCagGGACUugC- -5'
28844 3' -54.3 NC_006146.1 + 153979 0.66 0.96644
Target:  5'- gGGCCGCCGGGGucccuccgGC-CGg-CCUGAugGa -3'
miRNA:   3'- -CCGGUGGUUCU--------UGcGCagGGACUugC- -5'
28844 3' -54.3 NC_006146.1 + 150901 0.66 0.96644
Target:  5'- gGGCCGCCGGGGucccuccgGC-CGg-CCUGAugGa -3'
miRNA:   3'- -CCGGUGGUUCU--------UGcGCagGGACUugC- -5'
28844 3' -54.3 NC_006146.1 + 147823 0.66 0.96644
Target:  5'- gGGCCGCCGGGGucccuccgGC-CGg-CCUGAugGa -3'
miRNA:   3'- -CCGGUGGUUCU--------UGcGCagGGACUugC- -5'
28844 3' -54.3 NC_006146.1 + 144745 0.66 0.96644
Target:  5'- gGGCCGCCGGGGucccuccgGC-CGg-CCUGAugGa -3'
miRNA:   3'- -CCGGUGGUUCU--------UGcGCagGGACUugC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.