miRNA display CGI


Results 1 - 20 of 167 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28844 3' -54.3 NC_006146.1 + 54782 0.84 0.192082
Target:  5'- gGGCCGCCAgGGAGCGCG-CCUUGGGCa -3'
miRNA:   3'- -CCGGUGGU-UCUUGCGCaGGGACUUGc -5'
28844 3' -54.3 NC_006146.1 + 28230 0.71 0.790724
Target:  5'- cGGCCGgacCCGAGGAgGCG--CCUGGGCGa -3'
miRNA:   3'- -CCGGU---GGUUCUUgCGCagGGACUUGC- -5'
28844 3' -54.3 NC_006146.1 + 168588 0.71 0.808545
Target:  5'- uGCCGggggacCCGGGGGCGUGUCCCgcgacccgagGGGCGa -3'
miRNA:   3'- cCGGU------GGUUCUUGCGCAGGGa---------CUUGC- -5'
28844 3' -54.3 NC_006146.1 + 128869 0.66 0.972334
Target:  5'- gGGCCACgAAGAggGgGCGgaggcgggCCC-GAACGc -3'
miRNA:   3'- -CCGGUGgUUCU--UgCGCa-------GGGaCUUGC- -5'
28844 3' -54.3 NC_006146.1 + 111910 0.75 0.603286
Target:  5'- gGGCUucguUCAGGGACGCGUUCUUGGugGc -3'
miRNA:   3'- -CCGGu---GGUUCUUGCGCAGGGACUugC- -5'
28844 3' -54.3 NC_006146.1 + 56193 0.74 0.643975
Target:  5'- cGGCCGCCAGGGccCGgGUCUCgcGGACGa -3'
miRNA:   3'- -CCGGUGGUUCUu-GCgCAGGGa-CUUGC- -5'
28844 3' -54.3 NC_006146.1 + 49919 0.74 0.664295
Target:  5'- aGGCCGCCGAGGccacuCG-GUCCC-GGACGu -3'
miRNA:   3'- -CCGGUGGUUCUu----GCgCAGGGaCUUGC- -5'
28844 3' -54.3 NC_006146.1 + 95215 0.73 0.684512
Target:  5'- aGCUccuCCAGGGAgGCGUCCgUUGAGCGg -3'
miRNA:   3'- cCGGu--GGUUCUUgCGCAGG-GACUUGC- -5'
28844 3' -54.3 NC_006146.1 + 167656 0.72 0.772337
Target:  5'- uGCCGggggcCCGGGGGCGUGUCCCgcgacccgagGGGCGa -3'
miRNA:   3'- cCGGU-----GGUUCUUGCGCAGGGa---------CUUGC- -5'
28844 3' -54.3 NC_006146.1 + 25152 0.71 0.790724
Target:  5'- cGGCCGgacCCGAGGAgGCG--CCUGGGCGa -3'
miRNA:   3'- -CCGGU---GGUUCUUgCGCagGGACUUGC- -5'
28844 3' -54.3 NC_006146.1 + 15919 0.71 0.790724
Target:  5'- cGGCCGgacCCGAGGAgGCG--CCUGGGCGa -3'
miRNA:   3'- -CCGGU---GGUUCUUgCGCagGGACUUGC- -5'
28844 3' -54.3 NC_006146.1 + 47612 0.72 0.728287
Target:  5'- cGGCCGCCAGGGaucgccgauagggccACGagcCGUCUCUGGccGCGg -3'
miRNA:   3'- -CCGGUGGUUCU---------------UGC---GCAGGGACU--UGC- -5'
28844 3' -54.3 NC_006146.1 + 45823 0.78 0.433389
Target:  5'- cGGCCGCCucgaagacggagacgGGGAugGCGUCCCccGAGCc -3'
miRNA:   3'- -CCGGUGG---------------UUCUugCGCAGGGa-CUUGc -5'
28844 3' -54.3 NC_006146.1 + 18996 0.71 0.790724
Target:  5'- cGGCCGgacCCGAGGAgGCG--CCUGGGCGa -3'
miRNA:   3'- -CCGGU---GGUUCUUgCGCagGGACUUGC- -5'
28844 3' -54.3 NC_006146.1 + 123058 0.77 0.475442
Target:  5'- cGCCGgguCCAGGGACGCGUCCUgcgGGGCc -3'
miRNA:   3'- cCGGU---GGUUCUUGCGCAGGGa--CUUGc -5'
28844 3' -54.3 NC_006146.1 + 4122 0.73 0.694561
Target:  5'- cGGCgGCCAGcGAcuacGCGCGUgaCCUGGGCGu -3'
miRNA:   3'- -CCGgUGGUU-CU----UGCGCAg-GGACUUGC- -5'
28844 3' -54.3 NC_006146.1 + 22074 0.71 0.790724
Target:  5'- cGGCCGgacCCGAGGAgGCG--CCUGGGCGa -3'
miRNA:   3'- -CCGGU---GGUUCUUgCGCagGGACUUGC- -5'
28844 3' -54.3 NC_006146.1 + 46635 0.71 0.790724
Target:  5'- gGGCCuuggggGCCGAG-ACGUacUCCCUGAGCa -3'
miRNA:   3'- -CCGG------UGGUUCuUGCGc-AGGGACUUGc -5'
28844 3' -54.3 NC_006146.1 + 159721 0.76 0.55195
Target:  5'- uGGCCACCAGGuuccccccguagaGGCGC-UCCUUGAAUGc -3'
miRNA:   3'- -CCGGUGGUUC-------------UUGCGcAGGGACUUGC- -5'
28844 3' -54.3 NC_006146.1 + 157695 0.74 0.643975
Target:  5'- aGGCCuuCAGGAugGCGUUgUUGAGCc -3'
miRNA:   3'- -CCGGugGUUCUugCGCAGgGACUUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.