Results 21 - 40 of 167 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28844 | 3' | -54.3 | NC_006146.1 | + | 130057 | 0.7 | 0.834071 |
Target: 5'- gGGCCuCCAAGAGCGCc-CCCUGc--- -3' miRNA: 3'- -CCGGuGGUUCUUGCGcaGGGACuugc -5' |
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28844 | 3' | -54.3 | NC_006146.1 | + | 168588 | 0.71 | 0.808545 |
Target: 5'- uGCCGggggacCCGGGGGCGUGUCCCgcgacccgagGGGCGa -3' miRNA: 3'- cCGGU------GGUUCUUGCGCAGGGa---------CUUGC- -5' |
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28844 | 3' | -54.3 | NC_006146.1 | + | 47612 | 0.72 | 0.728287 |
Target: 5'- cGGCCGCCAGGGaucgccgauagggccACGagcCGUCUCUGGccGCGg -3' miRNA: 3'- -CCGGUGGUUCU---------------UGC---GCAGGGACU--UGC- -5' |
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28844 | 3' | -54.3 | NC_006146.1 | + | 159721 | 0.76 | 0.55195 |
Target: 5'- uGGCCACCAGGuuccccccguagaGGCGC-UCCUUGAAUGc -3' miRNA: 3'- -CCGGUGGUUC-------------UUGCGcAGGGACUUGC- -5' |
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28844 | 3' | -54.3 | NC_006146.1 | + | 97860 | 0.68 | 0.918211 |
Target: 5'- gGGCCGCCGaccccgggccguGGAACGaGggCCUGAGCc -3' miRNA: 3'- -CCGGUGGU------------UCUUGCgCagGGACUUGc -5' |
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28844 | 3' | -54.3 | NC_006146.1 | + | 37609 | 0.69 | 0.880042 |
Target: 5'- uGGCCuCgAAGAugGCGUCCUcaucGACGu -3' miRNA: 3'- -CCGGuGgUUCUugCGCAGGGac--UUGC- -5' |
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28844 | 3' | -54.3 | NC_006146.1 | + | 28230 | 0.71 | 0.790724 |
Target: 5'- cGGCCGgacCCGAGGAgGCG--CCUGGGCGa -3' miRNA: 3'- -CCGGU---GGUUCUUgCGCagGGACUUGC- -5' |
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28844 | 3' | -54.3 | NC_006146.1 | + | 123058 | 0.77 | 0.475442 |
Target: 5'- cGCCGgguCCAGGGACGCGUCCUgcgGGGCc -3' miRNA: 3'- cCGGU---GGUUCUUGCGCAGGGa--CUUGc -5' |
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28844 | 3' | -54.3 | NC_006146.1 | + | 5180 | 0.69 | 0.880042 |
Target: 5'- uGGCCAggcCCGAG-ACGUuuUCCCUGGGCc -3' miRNA: 3'- -CCGGU---GGUUCuUGCGc-AGGGACUUGc -5' |
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28844 | 3' | -54.3 | NC_006146.1 | + | 45823 | 0.78 | 0.433389 |
Target: 5'- cGGCCGCCucgaagacggagacgGGGAugGCGUCCCccGAGCc -3' miRNA: 3'- -CCGGUGG---------------UUCUugCGCAGGGa-CUUGc -5' |
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28844 | 3' | -54.3 | NC_006146.1 | + | 46635 | 0.71 | 0.790724 |
Target: 5'- gGGCCuuggggGCCGAG-ACGUacUCCCUGAGCa -3' miRNA: 3'- -CCGG------UGGUUCuUGCGc-AGGGACUUGc -5' |
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28844 | 3' | -54.3 | NC_006146.1 | + | 12840 | 0.7 | 0.857964 |
Target: 5'- cGGCCGgacCCGAGGAgGCG-CCUgGGGCGa -3' miRNA: 3'- -CCGGU---GGUUCUUgCGCaGGGaCUUGC- -5' |
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28844 | 3' | -54.3 | NC_006146.1 | + | 18996 | 0.71 | 0.790724 |
Target: 5'- cGGCCGgacCCGAGGAgGCG--CCUGGGCGa -3' miRNA: 3'- -CCGGU---GGUUCUUgCGCagGGACUUGC- -5' |
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28844 | 3' | -54.3 | NC_006146.1 | + | 167656 | 0.72 | 0.772337 |
Target: 5'- uGCCGggggcCCGGGGGCGUGUCCCgcgacccgagGGGCGa -3' miRNA: 3'- cCGGU-----GGUUCUUGCGCAGGGa---------CUUGC- -5' |
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28844 | 3' | -54.3 | NC_006146.1 | + | 49919 | 0.74 | 0.664295 |
Target: 5'- aGGCCGCCGAGGccacuCG-GUCCC-GGACGu -3' miRNA: 3'- -CCGGUGGUUCUu----GCgCAGGGaCUUGC- -5' |
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28844 | 3' | -54.3 | NC_006146.1 | + | 111910 | 0.75 | 0.603286 |
Target: 5'- gGGCUucguUCAGGGACGCGUUCUUGGugGc -3' miRNA: 3'- -CCGGu---GGUUCUUGCGCAGGGACUugC- -5' |
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28844 | 3' | -54.3 | NC_006146.1 | + | 158489 | 0.67 | 0.934147 |
Target: 5'- uGGaCCACCucGGcguccaccgccGCGUccacGUCCCUGAACa -3' miRNA: 3'- -CC-GGUGGuuCU-----------UGCG----CAGGGACUUGc -5' |
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28844 | 3' | -54.3 | NC_006146.1 | + | 68325 | 0.68 | 0.92376 |
Target: 5'- gGGCCGCgAgaGGAugGCGU-CgaGGACGg -3' miRNA: 3'- -CCGGUGgU--UCUugCGCAgGgaCUUGC- -5' |
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28844 | 3' | -54.3 | NC_006146.1 | + | 66456 | 0.68 | 0.906409 |
Target: 5'- uGCCuGCCGAGGGCGCcGcCCCUGucCa -3' miRNA: 3'- cCGG-UGGUUCUUGCG-CaGGGACuuGc -5' |
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28844 | 3' | -54.3 | NC_006146.1 | + | 108633 | 0.69 | 0.88284 |
Target: 5'- aGCUgACCcgugucucaauagugAAGAACGCuUCCCUGAGCa -3' miRNA: 3'- cCGG-UGG---------------UUCUUGCGcAGGGACUUGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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