miRNA display CGI


Results 21 - 40 of 167 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28844 3' -54.3 NC_006146.1 + 95215 0.73 0.684512
Target:  5'- aGCUccuCCAGGGAgGCGUCCgUUGAGCGg -3'
miRNA:   3'- cCGGu--GGUUCUUgCGCAGG-GACUUGC- -5'
28844 3' -54.3 NC_006146.1 + 4122 0.73 0.694561
Target:  5'- cGGCgGCCAGcGAcuacGCGCGUgaCCUGGGCGu -3'
miRNA:   3'- -CCGgUGGUU-CU----UGCGCAg-GGACUUGC- -5'
28844 3' -54.3 NC_006146.1 + 47612 0.72 0.728287
Target:  5'- cGGCCGCCAGGGaucgccgauagggccACGagcCGUCUCUGGccGCGg -3'
miRNA:   3'- -CCGGUGGUUCU---------------UGC---GCAGGGACU--UGC- -5'
28844 3' -54.3 NC_006146.1 + 165736 0.72 0.73415
Target:  5'- gGGCCugGCCAGGAACuucagcaggGCGUCUCgcaGGGCGg -3'
miRNA:   3'- -CCGG--UGGUUCUUG---------CGCAGGGa--CUUGC- -5'
28844 3' -54.3 NC_006146.1 + 43532 0.72 0.743851
Target:  5'- cGGCCACCAucAGuGGgGUGUCCgUGggUGa -3'
miRNA:   3'- -CCGGUGGU--UC-UUgCGCAGGgACuuGC- -5'
28844 3' -54.3 NC_006146.1 + 121293 0.72 0.752499
Target:  5'- aGGCCACCAaagAGAAcgagaagcgccucCGCGUCauCCUGGAgGa -3'
miRNA:   3'- -CCGGUGGU---UCUU-------------GCGCAG--GGACUUgC- -5'
28844 3' -54.3 NC_006146.1 + 101276 0.72 0.753455
Target:  5'- aGCCGCCcccaguaccccGGGGACGUGggCCUGGACGu -3'
miRNA:   3'- cCGGUGG-----------UUCUUGCGCagGGACUUGC- -5'
28844 3' -54.3 NC_006146.1 + 165936 0.72 0.762953
Target:  5'- aGGCCGCCAGGAGgcucuCGUGgcCCCUGGucccCGg -3'
miRNA:   3'- -CCGGUGGUUCUU-----GCGCa-GGGACUu---GC- -5'
28844 3' -54.3 NC_006146.1 + 41344 0.72 0.766721
Target:  5'- -aCCACCAGGGgguccaguuggagacACGUGUCCuCUGGugGg -3'
miRNA:   3'- ccGGUGGUUCU---------------UGCGCAGG-GACUugC- -5'
28844 3' -54.3 NC_006146.1 + 167656 0.72 0.772337
Target:  5'- uGCCGggggcCCGGGGGCGUGUCCCgcgacccgagGGGCGa -3'
miRNA:   3'- cCGGU-----GGUUCUUGCGCAGGGa---------CUUGC- -5'
28844 3' -54.3 NC_006146.1 + 46983 0.71 0.781597
Target:  5'- cGCCGCCAGGAAUuGCG-CCCgucGGACc -3'
miRNA:   3'- cCGGUGGUUCUUG-CGCaGGGa--CUUGc -5'
28844 3' -54.3 NC_006146.1 + 22074 0.71 0.790724
Target:  5'- cGGCCGgacCCGAGGAgGCG--CCUGGGCGa -3'
miRNA:   3'- -CCGGU---GGUUCUUgCGCagGGACUUGC- -5'
28844 3' -54.3 NC_006146.1 + 25152 0.71 0.790724
Target:  5'- cGGCCGgacCCGAGGAgGCG--CCUGGGCGa -3'
miRNA:   3'- -CCGGU---GGUUCUUgCGCagGGACUUGC- -5'
28844 3' -54.3 NC_006146.1 + 28230 0.71 0.790724
Target:  5'- cGGCCGgacCCGAGGAgGCG--CCUGGGCGa -3'
miRNA:   3'- -CCGGU---GGUUCUUgCGCagGGACUUGC- -5'
28844 3' -54.3 NC_006146.1 + 46635 0.71 0.790724
Target:  5'- gGGCCuuggggGCCGAG-ACGUacUCCCUGAGCa -3'
miRNA:   3'- -CCGG------UGGUUCuUGCGc-AGGGACUUGc -5'
28844 3' -54.3 NC_006146.1 + 18996 0.71 0.790724
Target:  5'- cGGCCGgacCCGAGGAgGCG--CCUGGGCGa -3'
miRNA:   3'- -CCGGU---GGUUCUUgCGCagGGACUUGC- -5'
28844 3' -54.3 NC_006146.1 + 15919 0.71 0.790724
Target:  5'- cGGCCGgacCCGAGGAgGCG--CCUGGGCGa -3'
miRNA:   3'- -CCGGU---GGUUCUUgCGCagGGACUUGC- -5'
28844 3' -54.3 NC_006146.1 + 42111 0.71 0.79971
Target:  5'- cGGCgCACgacuaCGAGGGCcucuggcacgccGUGUCCCUGAGCGu -3'
miRNA:   3'- -CCG-GUG-----GUUCUUG------------CGCAGGGACUUGC- -5'
28844 3' -54.3 NC_006146.1 + 145387 0.71 0.808545
Target:  5'- cGGCUgaacCCGAGGAgGCG-CCCgGAGCGa -3'
miRNA:   3'- -CCGGu---GGUUCUUgCGCaGGGaCUUGC- -5'
28844 3' -54.3 NC_006146.1 + 142309 0.71 0.808545
Target:  5'- cGGCUgaacCCGAGGAgGCG-CCCgGAGCGa -3'
miRNA:   3'- -CCGGu---GGUUCUUgCGCaGGGaCUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.