miRNA display CGI


Results 1 - 20 of 167 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28844 3' -54.3 NC_006146.1 + 58984 1.11 0.003644
Target:  5'- uGGCCACCAAGAACGCGUCCCUGAACGa -3'
miRNA:   3'- -CCGGUGGUUCUUGCGCAGGGACUUGC- -5'
28844 3' -54.3 NC_006146.1 + 47838 0.89 0.103975
Target:  5'- uGGCC-CCGcAGGACGCGUCCCUGGACc -3'
miRNA:   3'- -CCGGuGGU-UCUUGCGCAGGGACUUGc -5'
28844 3' -54.3 NC_006146.1 + 111727 0.88 0.110705
Target:  5'- aGGCCACCAcaaagguggcacacuGGGugGCGUCCCUGAGgCGg -3'
miRNA:   3'- -CCGGUGGU---------------UCUugCGCAGGGACUU-GC- -5'
28844 3' -54.3 NC_006146.1 + 54782 0.84 0.192082
Target:  5'- gGGCCGCCAgGGAGCGCG-CCUUGGGCa -3'
miRNA:   3'- -CCGGUGGU-UCUUGCGCaGGGACUUGc -5'
28844 3' -54.3 NC_006146.1 + 165806 0.82 0.27605
Target:  5'- cGGCCgGCUAGGGGgGCGUCCCUGGccGCGu -3'
miRNA:   3'- -CCGG-UGGUUCUUgCGCAGGGACU--UGC- -5'
28844 3' -54.3 NC_006146.1 + 45823 0.78 0.433389
Target:  5'- cGGCCGCCucgaagacggagacgGGGAugGCGUCCCccGAGCc -3'
miRNA:   3'- -CCGGUGG---------------UUCUugCGCAGGGa-CUUGc -5'
28844 3' -54.3 NC_006146.1 + 75680 0.78 0.438753
Target:  5'- uGGCCGCuCAAcGGACGCcUCCCUGGAgGa -3'
miRNA:   3'- -CCGGUG-GUU-CUUGCGcAGGGACUUgC- -5'
28844 3' -54.3 NC_006146.1 + 123058 0.77 0.475442
Target:  5'- cGCCGgguCCAGGGACGCGUCCUgcgGGGCc -3'
miRNA:   3'- cCGGU---GGUUCUUGCGCAGGGa--CUUGc -5'
28844 3' -54.3 NC_006146.1 + 106419 0.76 0.513597
Target:  5'- cGCCACaaCAAGGugGUGgagaCCCUGAGCGg -3'
miRNA:   3'- cCGGUG--GUUCUugCGCa---GGGACUUGC- -5'
28844 3' -54.3 NC_006146.1 + 71689 0.76 0.513597
Target:  5'- gGGCgCGCCGAGGcCGCGgccUCCCUGGagGCGg -3'
miRNA:   3'- -CCG-GUGGUUCUuGCGC---AGGGACU--UGC- -5'
28844 3' -54.3 NC_006146.1 + 77478 0.76 0.543014
Target:  5'- aGCCAaggcCCAGGGGC-UGUCCCUGAACa -3'
miRNA:   3'- cCGGU----GGUUCUUGcGCAGGGACUUGc -5'
28844 3' -54.3 NC_006146.1 + 159721 0.76 0.55195
Target:  5'- uGGCCACCAGGuuccccccguagaGGCGC-UCCUUGAAUGc -3'
miRNA:   3'- -CCGGUGGUUC-------------UUGCGcAGGGACUUGC- -5'
28844 3' -54.3 NC_006146.1 + 42852 0.75 0.572964
Target:  5'- gGGCCGCCAGGcccACGCGcagguUCCaCUGGugGg -3'
miRNA:   3'- -CCGGUGGUUCu--UGCGC-----AGG-GACUugC- -5'
28844 3' -54.3 NC_006146.1 + 111910 0.75 0.603286
Target:  5'- gGGCUucguUCAGGGACGCGUUCUUGGugGc -3'
miRNA:   3'- -CCGGu---GGUUCUUGCGCAGGGACUugC- -5'
28844 3' -54.3 NC_006146.1 + 120505 0.74 0.643975
Target:  5'- uGGCgGCCGAGGACGCGagCCgcgUGGAUGc -3'
miRNA:   3'- -CCGgUGGUUCUUGCGCagGG---ACUUGC- -5'
28844 3' -54.3 NC_006146.1 + 157695 0.74 0.643975
Target:  5'- aGGCCuuCAGGAugGCGUUgUUGAGCc -3'
miRNA:   3'- -CCGGugGUUCUugCGCAGgGACUUGc -5'
28844 3' -54.3 NC_006146.1 + 56193 0.74 0.643975
Target:  5'- cGGCCGCCAGGGccCGgGUCUCgcGGACGa -3'
miRNA:   3'- -CCGGUGGUUCUu-GCgCAGGGa-CUUGC- -5'
28844 3' -54.3 NC_006146.1 + 49919 0.74 0.664295
Target:  5'- aGGCCGCCGAGGccacuCG-GUCCC-GGACGu -3'
miRNA:   3'- -CCGGUGGUUCUu----GCgCAGGGaCUUGC- -5'
28844 3' -54.3 NC_006146.1 + 139066 0.74 0.664295
Target:  5'- cGGCCACCAu--ACGgG-CCCUGGugGc -3'
miRNA:   3'- -CCGGUGGUucuUGCgCaGGGACUugC- -5'
28844 3' -54.3 NC_006146.1 + 122387 0.73 0.674421
Target:  5'- cGGCgGCCAGGAACGCGgaggUgCUGGAg- -3'
miRNA:   3'- -CCGgUGGUUCUUGCGCa---GgGACUUgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.