miRNA display CGI


Results 1 - 20 of 213 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28844 5' -60.9 NC_006146.1 + 27243 0.66 0.758752
Target:  5'- cCUCGCCcaucGCcUUGCCCUGcgcccGGGGCCa -3'
miRNA:   3'- -GAGUGGu---CGuGACGGGGCu----CCCUGGg -5'
28844 5' -60.9 NC_006146.1 + 55582 0.66 0.730882
Target:  5'- aCUacaACCAGgAg-GCCgCCGAGGGGCUUa -3'
miRNA:   3'- -GAg--UGGUCgUgaCGG-GGCUCCCUGGG- -5'
28844 5' -60.9 NC_006146.1 + 45439 0.66 0.730882
Target:  5'- aUCACCuGaagGCUGUCUUuGGGGACCUg -3'
miRNA:   3'- gAGUGGuCg--UGACGGGGcUCCCUGGG- -5'
28844 5' -60.9 NC_006146.1 + 16695 0.66 0.729939
Target:  5'- -aCGCCAGCcagacgcagguccACgacGCCCCGGGguggauacuguGGACCUa -3'
miRNA:   3'- gaGUGGUCG-------------UGa--CGGGGCUC-----------CCUGGG- -5'
28844 5' -60.9 NC_006146.1 + 115122 0.66 0.711895
Target:  5'- gCUgGCCAGCgugguggccucGCUGCCCCu---GGCCCg -3'
miRNA:   3'- -GAgUGGUCG-----------UGACGGGGcuccCUGGG- -5'
28844 5' -60.9 NC_006146.1 + 91269 0.66 0.711895
Target:  5'- gCUCGCCGGcCugUGaCCCUGuccccGGGACg- -3'
miRNA:   3'- -GAGUGGUC-GugAC-GGGGCu----CCCUGgg -5'
28844 5' -60.9 NC_006146.1 + 76571 0.66 0.711895
Target:  5'- --gACCAGgACaugGuCCCCGuGGGGACCg -3'
miRNA:   3'- gagUGGUCgUGa--C-GGGGC-UCCCUGGg -5'
28844 5' -60.9 NC_006146.1 + 113772 0.66 0.711895
Target:  5'- -gCACCAGCc---CCCCGAaauuaGGGACCa -3'
miRNA:   3'- gaGUGGUCGugacGGGGCU-----CCCUGGg -5'
28844 5' -60.9 NC_006146.1 + 113535 0.66 0.710939
Target:  5'- -cCACCGGCGCcaccGCCgcagccucccucaCCGAcacccGGGGCCCc -3'
miRNA:   3'- gaGUGGUCGUGa---CGG-------------GGCU-----CCCUGGG- -5'
28844 5' -60.9 NC_006146.1 + 123855 0.66 0.730882
Target:  5'- -aCACCGGCGaccgGCCCCuucucgcacccAGGGcGCCCg -3'
miRNA:   3'- gaGUGGUCGUga--CGGGGc----------UCCC-UGGG- -5'
28844 5' -60.9 NC_006146.1 + 37484 0.66 0.739327
Target:  5'- aUCACCGGCACUagguuCCaCCGAaGGuuauagaGACCCc -3'
miRNA:   3'- gAGUGGUCGUGAc----GG-GGCU-CC-------CUGGG- -5'
28844 5' -60.9 NC_006146.1 + 5388 0.66 0.749554
Target:  5'- cCUCAUguG-GCUGCUCCGAGaauacGGugCCu -3'
miRNA:   3'- -GAGUGguCgUGACGGGGCUC-----CCugGG- -5'
28844 5' -60.9 NC_006146.1 + 161424 0.66 0.758752
Target:  5'- --uGCCAG-GCgggugugGCCCCGcGGGaACCCa -3'
miRNA:   3'- gagUGGUCgUGa------CGGGGCuCCC-UGGG- -5'
28844 5' -60.9 NC_006146.1 + 71343 0.66 0.758752
Target:  5'- cCUC-CUGGaccccgaucuCUGCCCCG-GGGGCUCg -3'
miRNA:   3'- -GAGuGGUCgu--------GACGGGGCuCCCUGGG- -5'
28844 5' -60.9 NC_006146.1 + 157453 0.66 0.757837
Target:  5'- -cCACCcGgGCUGCCggggucccuCCGGcuggccuGGGACCCg -3'
miRNA:   3'- gaGUGGuCgUGACGG---------GGCU-------CCCUGGG- -5'
28844 5' -60.9 NC_006146.1 + 154375 0.66 0.757837
Target:  5'- -cCACCcGgGCUGCCggggucccuCCGGcuggccuGGGACCCg -3'
miRNA:   3'- gaGUGGuCgUGACGG---------GGCU-------CCCUGGG- -5'
28844 5' -60.9 NC_006146.1 + 151297 0.66 0.757837
Target:  5'- -cCACCcGgGCUGCCggggucccuCCGGcuggccuGGGACCCg -3'
miRNA:   3'- gaGUGGuCgUGACGG---------GGCU-------CCCUGGG- -5'
28844 5' -60.9 NC_006146.1 + 148219 0.66 0.757837
Target:  5'- -cCACCcGgGCUGCCggggucccuCCGGcuggccuGGGACCCg -3'
miRNA:   3'- gaGUGGuCgUGACGG---------GGCU-------CCCUGGG- -5'
28844 5' -60.9 NC_006146.1 + 145141 0.66 0.757837
Target:  5'- -cCACCcGgGCUGCCggggucccuCCGGcuggccuGGGACCCg -3'
miRNA:   3'- gaGUGGuCgUGACGG---------GGCU-------CCCUGGG- -5'
28844 5' -60.9 NC_006146.1 + 142063 0.66 0.757837
Target:  5'- -cCACCcGgGCUGCCggggucccuCCGGcuggccuGGGACCCg -3'
miRNA:   3'- gaGUGGuCgUGACGG---------GGCU-------CCCUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.