miRNA display CGI


Results 1 - 20 of 213 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28844 5' -60.9 NC_006146.1 + 56294 0.79 0.143976
Target:  5'- -aCGuCCAGCGCcGCCUCGAGGuGGCCCa -3'
miRNA:   3'- gaGU-GGUCGUGaCGGGGCUCC-CUGGG- -5'
28844 5' -60.9 NC_006146.1 + 67896 0.73 0.326545
Target:  5'- --gACCAGCACgaacuggGCCUCGuGGGAgCCg -3'
miRNA:   3'- gagUGGUCGUGa------CGGGGCuCCCUgGG- -5'
28844 5' -60.9 NC_006146.1 + 114208 0.73 0.355857
Target:  5'- gCUCAgguuguCCAGCAgggcCaGCCCCaGGGGGCCCg -3'
miRNA:   3'- -GAGU------GGUCGU----GaCGGGGcUCCCUGGG- -5'
28844 5' -60.9 NC_006146.1 + 27243 0.66 0.758752
Target:  5'- cCUCGCCcaucGCcUUGCCCUGcgcccGGGGCCa -3'
miRNA:   3'- -GAGUGGu---CGuGACGGGGCu----CCCUGGg -5'
28844 5' -60.9 NC_006146.1 + 89106 0.78 0.158825
Target:  5'- -cUACCGGCACUGCCCCaGGuGGcACCCc -3'
miRNA:   3'- gaGUGGUCGUGACGGGGcUC-CC-UGGG- -5'
28844 5' -60.9 NC_006146.1 + 44940 0.78 0.175044
Target:  5'- uCUCgugGCCaggGGCGCggggagGCCCCGGGGGACUCg -3'
miRNA:   3'- -GAG---UGG---UCGUGa-----CGGGGCUCCCUGGG- -5'
28844 5' -60.9 NC_006146.1 + 62502 0.75 0.255339
Target:  5'- -cCAgCAGCACcugGCCCUGGGGGGCUg -3'
miRNA:   3'- gaGUgGUCGUGa--CGGGGCUCCCUGGg -5'
28844 5' -60.9 NC_006146.1 + 168579 0.75 0.26727
Target:  5'- ---cCCGGCGC-GUgCCGGGGGACCCg -3'
miRNA:   3'- gaguGGUCGUGaCGgGGCUCCCUGGG- -5'
28844 5' -60.9 NC_006146.1 + 55690 0.75 0.279647
Target:  5'- -gCACgGGCACggccGCCgCCGGGGGGCUCu -3'
miRNA:   3'- gaGUGgUCGUGa---CGG-GGCUCCCUGGG- -5'
28844 5' -60.9 NC_006146.1 + 61493 0.74 0.319502
Target:  5'- aUCACCAGg---GCUCCGAGGaGGCCCc -3'
miRNA:   3'- gAGUGGUCgugaCGGGGCUCC-CUGGG- -5'
28844 5' -60.9 NC_006146.1 + 33254 0.74 0.30576
Target:  5'- -cCGCCGGgcCGCUGCCCCGcuccgggugggGGGuGGCCCg -3'
miRNA:   3'- gaGUGGUC--GUGACGGGGC-----------UCC-CUGGG- -5'
28844 5' -60.9 NC_006146.1 + 170442 0.75 0.26727
Target:  5'- ---cCCGGCGC-GUgCCGGGGGACCCg -3'
miRNA:   3'- gaguGGUCGUGaCGgGGCUCCCUGGG- -5'
28844 5' -60.9 NC_006146.1 + 167865 0.78 0.158825
Target:  5'- gCUCAgaUCGGCGCgggggaGCCCCGGGGcGGCCCg -3'
miRNA:   3'- -GAGU--GGUCGUGa-----CGGGGCUCC-CUGGG- -5'
28844 5' -60.9 NC_006146.1 + 33376 0.74 0.30576
Target:  5'- -cCGCCGGgcCGCUGCCCCGcuccgggugggGGGuGGCCCg -3'
miRNA:   3'- gaGUGGUC--GUGACGGGGC-----------UCC-CUGGG- -5'
28844 5' -60.9 NC_006146.1 + 168797 0.78 0.158825
Target:  5'- gCUCAgaUCGGCGCgggggaGCCCCGGGGcGGCCCg -3'
miRNA:   3'- -GAGU--GGUCGUGa-----CGGGGCUCC-CUGGG- -5'
28844 5' -60.9 NC_006146.1 + 169511 0.75 0.26727
Target:  5'- ---cCCGGCGC-GUgCCGGGGGACCCg -3'
miRNA:   3'- gaguGGUCGUGaCGgGGCUCCCUGGG- -5'
28844 5' -60.9 NC_006146.1 + 74719 0.74 0.319502
Target:  5'- gCUCaggGCCAGaaagGCCCUgGAGGGACCCa -3'
miRNA:   3'- -GAG---UGGUCgugaCGGGG-CUCCCUGGG- -5'
28844 5' -60.9 NC_006146.1 + 102530 0.73 0.333702
Target:  5'- gUCACCAGCACcGCCaCG-GGGAUCUc -3'
miRNA:   3'- gAGUGGUCGUGaCGGgGCuCCCUGGG- -5'
28844 5' -60.9 NC_006146.1 + 169729 0.78 0.158825
Target:  5'- gCUCAgaUCGGCGCgggggaGCCCCGGGGcGGCCCg -3'
miRNA:   3'- -GAGU--GGUCGUGa-----CGGGGCUCC-CUGGG- -5'
28844 5' -60.9 NC_006146.1 + 33129 0.77 0.192721
Target:  5'- uUCGCCGGgcCGCUGCCCCGcuccgggugggGGGuGGCCCg -3'
miRNA:   3'- gAGUGGUC--GUGACGGGGC-----------UCC-CUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.