miRNA display CGI


Results 21 - 40 of 213 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28844 5' -60.9 NC_006146.1 + 13498 0.72 0.408965
Target:  5'- cCUCuCCAGgGCUucagagcccagaacGUCCCGAgaaGGGACCCg -3'
miRNA:   3'- -GAGuGGUCgUGA--------------CGGGGCU---CCCUGGG- -5'
28844 5' -60.9 NC_006146.1 + 114208 0.73 0.355857
Target:  5'- gCUCAgguuguCCAGCAgggcCaGCCCCaGGGGGCCCg -3'
miRNA:   3'- -GAGU------GGUCGU----GaCGGGGcUCCCUGGG- -5'
28844 5' -60.9 NC_006146.1 + 170442 0.75 0.26727
Target:  5'- ---cCCGGCGC-GUgCCGGGGGACCCg -3'
miRNA:   3'- gaguGGUCGUGaCGgGGCUCCCUGGG- -5'
28844 5' -60.9 NC_006146.1 + 169729 0.78 0.158825
Target:  5'- gCUCAgaUCGGCGCgggggaGCCCCGGGGcGGCCCg -3'
miRNA:   3'- -GAGU--GGUCGUGa-----CGGGGCUCC-CUGGG- -5'
28844 5' -60.9 NC_006146.1 + 41255 0.71 0.454316
Target:  5'- uCUCGCCauucccgggcggAGCACgcGCCCgCGGaGGACCCg -3'
miRNA:   3'- -GAGUGG------------UCGUGa-CGGG-GCUcCCUGGG- -5'
28844 5' -60.9 NC_006146.1 + 28888 0.72 0.408965
Target:  5'- cCUCuCCAGgGCUucagagcccagaacGUCCCGAgaaGGGACCCg -3'
miRNA:   3'- -GAGuGGUCgUGA--------------CGGGGCU---CCCUGGG- -5'
28844 5' -60.9 NC_006146.1 + 67896 0.73 0.326545
Target:  5'- --gACCAGCACgaacuggGCCUCGuGGGAgCCg -3'
miRNA:   3'- gagUGGUCGUGa------CGGGGCuCCCUgGG- -5'
28844 5' -60.9 NC_006146.1 + 168797 0.78 0.158825
Target:  5'- gCUCAgaUCGGCGCgggggaGCCCCGGGGcGGCCCg -3'
miRNA:   3'- -GAGU--GGUCGUGa-----CGGGGCUCC-CUGGG- -5'
28844 5' -60.9 NC_006146.1 + 25810 0.72 0.408965
Target:  5'- cCUCuCCAGgGCUucagagcccagaacGUCCCGAgaaGGGACCCg -3'
miRNA:   3'- -GAGuGGUCgUGA--------------CGGGGCU---CCCUGGG- -5'
28844 5' -60.9 NC_006146.1 + 167865 0.78 0.158825
Target:  5'- gCUCAgaUCGGCGCgggggaGCCCCGGGGcGGCCCg -3'
miRNA:   3'- -GAGU--GGUCGUGa-----CGGGGCUCC-CUGGG- -5'
28844 5' -60.9 NC_006146.1 + 102530 0.73 0.333702
Target:  5'- gUCACCAGCACcGCCaCG-GGGAUCUc -3'
miRNA:   3'- gAGUGGUCGUGaCGGgGCuCCCUGGG- -5'
28844 5' -60.9 NC_006146.1 + 16576 0.72 0.408965
Target:  5'- cCUCuCCAGgGCUucagagcccagaacGUCCCGAgaaGGGACCCg -3'
miRNA:   3'- -GAGuGGUCgUGA--------------CGGGGCU---CCCUGGG- -5'
28844 5' -60.9 NC_006146.1 + 33376 0.74 0.30576
Target:  5'- -cCGCCGGgcCGCUGCCCCGcuccgggugggGGGuGGCCCg -3'
miRNA:   3'- gaGUGGUC--GUGACGGGGC-----------UCC-CUGGG- -5'
28844 5' -60.9 NC_006146.1 + 55690 0.75 0.279647
Target:  5'- -gCACgGGCACggccGCCgCCGGGGGGCUCu -3'
miRNA:   3'- gaGUGgUCGUGa---CGG-GGCUCCCUGGG- -5'
28844 5' -60.9 NC_006146.1 + 62502 0.75 0.255339
Target:  5'- -cCAgCAGCACcugGCCCUGGGGGGCUg -3'
miRNA:   3'- gaGUgGUCGUGa--CGGGGCUCCCUGGg -5'
28844 5' -60.9 NC_006146.1 + 89106 0.78 0.158825
Target:  5'- -cUACCGGCACUGCCCCaGGuGGcACCCc -3'
miRNA:   3'- gaGUGGUCGUGACGGGGcUC-CC-UGGG- -5'
28844 5' -60.9 NC_006146.1 + 19880 0.7 0.499482
Target:  5'- -cCACCAG-GCcGgCCgGAGGGACCCc -3'
miRNA:   3'- gaGUGGUCgUGaCgGGgCUCCCUGGG- -5'
28844 5' -60.9 NC_006146.1 + 101939 0.7 0.481163
Target:  5'- aUCAgCGGCuCUGCCCUGcccccuggcuAGGGGCuCCg -3'
miRNA:   3'- gAGUgGUCGuGACGGGGC----------UCCCUG-GG- -5'
28844 5' -60.9 NC_006146.1 + 169050 0.72 0.411456
Target:  5'- --gGCCGGCGCgcgcccgggGUCCCGGGGGGCg- -3'
miRNA:   3'- gagUGGUCGUGa--------CGGGGCUCCCUGgg -5'
28844 5' -60.9 NC_006146.1 + 140613 0.72 0.411456
Target:  5'- -gCACCAGCGaaGCCCaggaGGGGACCa -3'
miRNA:   3'- gaGUGGUCGUgaCGGGgc--UCCCUGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.