miRNA display CGI


Results 21 - 40 of 213 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28844 5' -60.9 NC_006146.1 + 33254 0.74 0.30576
Target:  5'- -cCGCCGGgcCGCUGCCCCGcuccgggugggGGGuGGCCCg -3'
miRNA:   3'- gaGUGGUC--GUGACGGGGC-----------UCC-CUGGG- -5'
28844 5' -60.9 NC_006146.1 + 33376 0.74 0.30576
Target:  5'- -cCGCCGGgcCGCUGCCCCGcuccgggugggGGGuGGCCCg -3'
miRNA:   3'- gaGUGGUC--GUGACGGGGC-----------UCC-CUGGG- -5'
28844 5' -60.9 NC_006146.1 + 108969 0.74 0.312574
Target:  5'- aUCACCgGGCcCgugaagGCCUCgGAGGGACCCa -3'
miRNA:   3'- gAGUGG-UCGuGa-----CGGGG-CUCCCUGGG- -5'
28844 5' -60.9 NC_006146.1 + 74719 0.74 0.319502
Target:  5'- gCUCaggGCCAGaaagGCCCUgGAGGGACCCa -3'
miRNA:   3'- -GAG---UGGUCgugaCGGGG-CUCCCUGGG- -5'
28844 5' -60.9 NC_006146.1 + 61493 0.74 0.319502
Target:  5'- aUCACCAGg---GCUCCGAGGaGGCCCc -3'
miRNA:   3'- gAGUGGUCgugaCGGGGCUCC-CUGGG- -5'
28844 5' -60.9 NC_006146.1 + 67896 0.73 0.326545
Target:  5'- --gACCAGCACgaacuggGCCUCGuGGGAgCCg -3'
miRNA:   3'- gagUGGUCGUGa------CGGGGCuCCCUgGG- -5'
28844 5' -60.9 NC_006146.1 + 102530 0.73 0.333702
Target:  5'- gUCACCAGCACcGCCaCG-GGGAUCUc -3'
miRNA:   3'- gAGUGGUCGUGaCGGgGCuCCCUGGG- -5'
28844 5' -60.9 NC_006146.1 + 60950 0.73 0.340973
Target:  5'- gUUGCCuGuCACUGUUUCGAGGGGCCUa -3'
miRNA:   3'- gAGUGGuC-GUGACGGGGCUCCCUGGG- -5'
28844 5' -60.9 NC_006146.1 + 8038 0.73 0.354349
Target:  5'- aUCGCUGGCACccgcuggacccgGCCCUGGGGGugUCu -3'
miRNA:   3'- gAGUGGUCGUGa-----------CGGGGCUCCCugGG- -5'
28844 5' -60.9 NC_006146.1 + 114208 0.73 0.355857
Target:  5'- gCUCAgguuguCCAGCAgggcCaGCCCCaGGGGGCCCg -3'
miRNA:   3'- -GAGU------GGUCGU----GaCGGGGcUCCCUGGG- -5'
28844 5' -60.9 NC_006146.1 + 150695 0.73 0.361174
Target:  5'- -gCACCAGUACaUgcccagccuccugcGCCCCcGGGGGCCCu -3'
miRNA:   3'- gaGUGGUCGUG-A--------------CGGGGcUCCCUGGG- -5'
28844 5' -60.9 NC_006146.1 + 156793 0.73 0.363469
Target:  5'- -cCGCCAGCA--GCCCCGAcaucccgcccugGGGACUCu -3'
miRNA:   3'- gaGUGGUCGUgaCGGGGCU------------CCCUGGG- -5'
28844 5' -60.9 NC_006146.1 + 71860 0.72 0.371193
Target:  5'- -aCACCcGCcggGCCCUGGGGGGCCUc -3'
miRNA:   3'- gaGUGGuCGugaCGGGGCUCCCUGGG- -5'
28844 5' -60.9 NC_006146.1 + 31744 0.72 0.371193
Target:  5'- cCUCACaGGCGCccCCCCGGGGGACg- -3'
miRNA:   3'- -GAGUGgUCGUGacGGGGCUCCCUGgg -5'
28844 5' -60.9 NC_006146.1 + 3701 0.72 0.379028
Target:  5'- --gGCCGcGCGCcGCCCCccGGGACCCc -3'
miRNA:   3'- gagUGGU-CGUGaCGGGGcuCCCUGGG- -5'
28844 5' -60.9 NC_006146.1 + 1837 0.72 0.379028
Target:  5'- --gGCCGcGCGCcGCCCCccGGGACCCc -3'
miRNA:   3'- gagUGGU-CGUGaCGGGGcuCCCUGGG- -5'
28844 5' -60.9 NC_006146.1 + 2769 0.72 0.379028
Target:  5'- --gGCCGcGCGCcGCCCCccGGGACCCc -3'
miRNA:   3'- gagUGGU-CGUGaCGGGGcuCCCUGGG- -5'
28844 5' -60.9 NC_006146.1 + 905 0.72 0.379028
Target:  5'- --gGCCGcGCGCcGCCCCccGGGACCCc -3'
miRNA:   3'- gagUGGU-CGUGaCGGGGcuCCCUGGG- -5'
28844 5' -60.9 NC_006146.1 + 16576 0.72 0.408965
Target:  5'- cCUCuCCAGgGCUucagagcccagaacGUCCCGAgaaGGGACCCg -3'
miRNA:   3'- -GAGuGGUCgUGA--------------CGGGGCU---CCCUGGG- -5'
28844 5' -60.9 NC_006146.1 + 13498 0.72 0.408965
Target:  5'- cCUCuCCAGgGCUucagagcccagaacGUCCCGAgaaGGGACCCg -3'
miRNA:   3'- -GAGuGGUCgUGA--------------CGGGGCU---CCCUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.