miRNA display CGI


Results 21 - 40 of 213 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28844 5' -60.9 NC_006146.1 + 52264 0.66 0.749554
Target:  5'- -gCACguGUACUggGCCCCG-GGcGCCCc -3'
miRNA:   3'- gaGUGguCGUGA--CGGGGCuCCcUGGG- -5'
28844 5' -60.9 NC_006146.1 + 128494 0.66 0.749554
Target:  5'- uCUCGCCuucgaggacGGCGuCggggugGCCCUGGGGcGCCCc -3'
miRNA:   3'- -GAGUGG---------UCGU-Ga-----CGGGGCUCCcUGGG- -5'
28844 5' -60.9 NC_006146.1 + 5388 0.66 0.749554
Target:  5'- cCUCAUguG-GCUGCUCCGAGaauacGGugCCu -3'
miRNA:   3'- -GAGUGguCgUGACGGGGCUC-----CCugGG- -5'
28844 5' -60.9 NC_006146.1 + 43322 0.66 0.748629
Target:  5'- --gGCCGGCGCgGCCUCGgccgcccAGGGccagcaggcgcaGCCCg -3'
miRNA:   3'- gagUGGUCGUGaCGGGGC-------UCCC------------UGGG- -5'
28844 5' -60.9 NC_006146.1 + 154976 0.66 0.740261
Target:  5'- ---gUCAGCACgGCCUCGcgcAGGG-CCCg -3'
miRNA:   3'- gaguGGUCGUGaCGGGGC---UCCCuGGG- -5'
28844 5' -60.9 NC_006146.1 + 79614 0.66 0.740261
Target:  5'- -gCACCGGUgaGCUcGUCCCG-GGGACa- -3'
miRNA:   3'- gaGUGGUCG--UGA-CGGGGCuCCCUGgg -5'
28844 5' -60.9 NC_006146.1 + 14976 0.66 0.740261
Target:  5'- aUCGCCGGCuccGCcauccaaGCCuaGGGGaGACCCa -3'
miRNA:   3'- gAGUGGUCG---UGa------CGGggCUCC-CUGGG- -5'
28844 5' -60.9 NC_006146.1 + 129023 0.66 0.740261
Target:  5'- aCUCAgguCCggGGCACgGCgcagCCCGAGcuGGGCCCa -3'
miRNA:   3'- -GAGU---GG--UCGUGaCG----GGGCUC--CCUGGG- -5'
28844 5' -60.9 NC_006146.1 + 37484 0.66 0.739327
Target:  5'- aUCACCGGCACUagguuCCaCCGAaGGuuauagaGACCCc -3'
miRNA:   3'- gAGUGGUCGUGAc----GG-GGCU-CC-------CUGGG- -5'
28844 5' -60.9 NC_006146.1 + 34043 0.66 0.730882
Target:  5'- gUC-CCGGgGCcuaUGCCggCCGGGGGuCCCg -3'
miRNA:   3'- gAGuGGUCgUG---ACGG--GGCUCCCuGGG- -5'
28844 5' -60.9 NC_006146.1 + 123855 0.66 0.730882
Target:  5'- -aCACCGGCGaccgGCCCCuucucgcacccAGGGcGCCCg -3'
miRNA:   3'- gaGUGGUCGUga--CGGGGc----------UCCC-UGGG- -5'
28844 5' -60.9 NC_006146.1 + 129768 0.66 0.730882
Target:  5'- ---gUCAGCGCacGCCCCucccccGGGACCCu -3'
miRNA:   3'- gaguGGUCGUGa-CGGGGcu----CCCUGGG- -5'
28844 5' -60.9 NC_006146.1 + 55582 0.66 0.730882
Target:  5'- aCUacaACCAGgAg-GCCgCCGAGGGGCUUa -3'
miRNA:   3'- -GAg--UGGUCgUgaCGG-GGCUCCCUGGG- -5'
28844 5' -60.9 NC_006146.1 + 45439 0.66 0.730882
Target:  5'- aUCACCuGaagGCUGUCUUuGGGGACCUg -3'
miRNA:   3'- gAGUGGuCg--UGACGGGGcUCCCUGGG- -5'
28844 5' -60.9 NC_006146.1 + 66447 0.66 0.730882
Target:  5'- --aGCC-GCAgCUGCCugCCGAGGGcgccGCCCc -3'
miRNA:   3'- gagUGGuCGU-GACGG--GGCUCCC----UGGG- -5'
28844 5' -60.9 NC_006146.1 + 16695 0.66 0.729939
Target:  5'- -aCGCCAGCcagacgcagguccACgacGCCCCGGGguggauacuguGGACCUa -3'
miRNA:   3'- gaGUGGUCG-------------UGa--CGGGGCUC-----------CCUGGG- -5'
28844 5' -60.9 NC_006146.1 + 44407 0.66 0.721424
Target:  5'- --gGCaCGGCGCcuuCCUCGAGGGGCUCc -3'
miRNA:   3'- gagUG-GUCGUGac-GGGGCUCCCUGGG- -5'
28844 5' -60.9 NC_006146.1 + 36296 0.66 0.721424
Target:  5'- uUCACCAGCaaggcgGCUGgCCUucuuuacuGAGGGGCaaCCg -3'
miRNA:   3'- gAGUGGUCG------UGACgGGG--------CUCCCUG--GG- -5'
28844 5' -60.9 NC_006146.1 + 43480 0.66 0.720474
Target:  5'- cCUCGgCGGCcguugacACcgGCUCCGGcggcGGGGCCCa -3'
miRNA:   3'- -GAGUgGUCG-------UGa-CGGGGCU----CCCUGGG- -5'
28844 5' -60.9 NC_006146.1 + 8234 0.66 0.719523
Target:  5'- aCUCAUCcccgugaAGCAuCUGCCUaCGAGGGggcaugcACCCc -3'
miRNA:   3'- -GAGUGG-------UCGU-GACGGG-GCUCCC-------UGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.