miRNA display CGI


Results 41 - 60 of 213 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28844 5' -60.9 NC_006146.1 + 91269 0.66 0.711895
Target:  5'- gCUCGCCGGcCugUGaCCCUGuccccGGGACg- -3'
miRNA:   3'- -GAGUGGUC-GugAC-GGGGCu----CCCUGgg -5'
28844 5' -60.9 NC_006146.1 + 113772 0.66 0.711895
Target:  5'- -gCACCAGCc---CCCCGAaauuaGGGACCa -3'
miRNA:   3'- gaGUGGUCGugacGGGGCU-----CCCUGGg -5'
28844 5' -60.9 NC_006146.1 + 76571 0.66 0.711895
Target:  5'- --gACCAGgACaugGuCCCCGuGGGGACCg -3'
miRNA:   3'- gagUGGUCgUGa--C-GGGGC-UCCCUGGg -5'
28844 5' -60.9 NC_006146.1 + 115122 0.66 0.711895
Target:  5'- gCUgGCCAGCgugguggccucGCUGCCCCu---GGCCCg -3'
miRNA:   3'- -GAgUGGUCG-----------UGACGGGGcuccCUGGG- -5'
28844 5' -60.9 NC_006146.1 + 113535 0.66 0.710939
Target:  5'- -cCACCGGCGCcaccGCCgcagccucccucaCCGAcacccGGGGCCCc -3'
miRNA:   3'- gaGUGGUCGUGa---CGG-------------GGCU-----CCCUGGG- -5'
28844 5' -60.9 NC_006146.1 + 25540 0.66 0.706148
Target:  5'- gCUgGCUGGCuCUGCCCCucucucuguccuccaGGGGGAaCCa -3'
miRNA:   3'- -GAgUGGUCGuGACGGGG---------------CUCCCUgGG- -5'
28844 5' -60.9 NC_006146.1 + 13228 0.66 0.706148
Target:  5'- gCUgGCUGGCuCUGCCCCucucucuguccuccaGGGGGAaCCa -3'
miRNA:   3'- -GAgUGGUCGuGACGGGG---------------CUCCCUgGG- -5'
28844 5' -60.9 NC_006146.1 + 16306 0.66 0.706148
Target:  5'- gCUgGCUGGCuCUGCCCCucucucuguccuccaGGGGGAaCCa -3'
miRNA:   3'- -GAgUGGUCGuGACGGGG---------------CUCCCUgGG- -5'
28844 5' -60.9 NC_006146.1 + 22462 0.66 0.706148
Target:  5'- gCUgGCUGGCuCUGCCCCucucucuguccuccaGGGGGAaCCa -3'
miRNA:   3'- -GAgUGGUCGuGACGGGG---------------CUCCCUgGG- -5'
28844 5' -60.9 NC_006146.1 + 19384 0.66 0.706148
Target:  5'- gCUgGCUGGCuCUGCCCCucucucuguccuccaGGGGGAaCCa -3'
miRNA:   3'- -GAgUGGUCGuGACGGGG---------------CUCCCUgGG- -5'
28844 5' -60.9 NC_006146.1 + 28618 0.66 0.706148
Target:  5'- gCUgGCUGGCuCUGCCCCucucucuguccuccaGGGGGAaCCa -3'
miRNA:   3'- -GAgUGGUCGuGACGGGG---------------CUCCCUgGG- -5'
28844 5' -60.9 NC_006146.1 + 63103 0.66 0.702304
Target:  5'- cCUCGCUGaaggagacccuGCGCaggUGCCCCu-GGGACCUg -3'
miRNA:   3'- -GAGUGGU-----------CGUG---ACGGGGcuCCCUGGG- -5'
28844 5' -60.9 NC_006146.1 + 126225 0.66 0.702304
Target:  5'- -aCACCGGCAUcaucGUCCguuuuGGGACCCa -3'
miRNA:   3'- gaGUGGUCGUGa---CGGGgcu--CCCUGGG- -5'
28844 5' -60.9 NC_006146.1 + 157824 0.66 0.702304
Target:  5'- aCUCcuCC-GCGCUgGCCCCGgaGGGGACg- -3'
miRNA:   3'- -GAGu-GGuCGUGA-CGGGGC--UCCCUGgg -5'
28844 5' -60.9 NC_006146.1 + 20582 0.66 0.702304
Target:  5'- --aGCCGGC-CUGCgCCCGGGcgaGGACUa -3'
miRNA:   3'- gagUGGUCGuGACG-GGGCUC---CCUGGg -5'
28844 5' -60.9 NC_006146.1 + 61353 0.67 0.696523
Target:  5'- uUCACCAGCG-UGCCCguguacugcgaggaGGGaGGACCg -3'
miRNA:   3'- gAGUGGUCGUgACGGGg-------------CUC-CCUGGg -5'
28844 5' -60.9 NC_006146.1 + 151731 0.67 0.692659
Target:  5'- aCUCuGCCAGCAgaGaCCCGGGcGAUCCc -3'
miRNA:   3'- -GAG-UGGUCGUgaCgGGGCUCcCUGGG- -5'
28844 5' -60.9 NC_006146.1 + 149701 0.67 0.692659
Target:  5'- aCUUACCu---CUGgCCCGAgaccugGGGGCCCg -3'
miRNA:   3'- -GAGUGGucguGACgGGGCU------CCCUGGG- -5'
28844 5' -60.9 NC_006146.1 + 148654 0.67 0.692659
Target:  5'- aCUCuGCCAGCAgaGaCCCGGGcGAUCCc -3'
miRNA:   3'- -GAG-UGGUCGUgaCgGGGCUCcCUGGG- -5'
28844 5' -60.9 NC_006146.1 + 146624 0.67 0.692659
Target:  5'- aCUUACCu---CUGgCCCGAgaccugGGGGCCCg -3'
miRNA:   3'- -GAGUGGucguGACgGGGCU------CCCUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.