miRNA display CGI


Results 21 - 40 of 213 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28844 5' -60.9 NC_006146.1 + 8234 0.66 0.719523
Target:  5'- aCUCAUCcccgugaAGCAuCUGCCUaCGAGGGggcaugcACCCc -3'
miRNA:   3'- -GAGUGG-------UCGU-GACGGG-GCUCCC-------UGGG- -5'
28844 5' -60.9 NC_006146.1 + 13228 0.66 0.706148
Target:  5'- gCUgGCUGGCuCUGCCCCucucucuguccuccaGGGGGAaCCa -3'
miRNA:   3'- -GAgUGGUCGuGACGGGG---------------CUCCCUgGG- -5'
28844 5' -60.9 NC_006146.1 + 13427 0.67 0.692659
Target:  5'- cCUCcCCGGguCccagGCCagCCgGAGGGACCCc -3'
miRNA:   3'- -GAGuGGUCguGa---CGG--GG-CUCCCUGGG- -5'
28844 5' -60.9 NC_006146.1 + 13498 0.72 0.408965
Target:  5'- cCUCuCCAGgGCUucagagcccagaacGUCCCGAgaaGGGACCCg -3'
miRNA:   3'- -GAGuGGUCgUGA--------------CGGGGCU---CCCUGGG- -5'
28844 5' -60.9 NC_006146.1 + 13724 0.7 0.499482
Target:  5'- -cCACCAG-GCcGgCCgGAGGGACCCc -3'
miRNA:   3'- gaGUGGUCgUGaCgGGgCUCCCUGGG- -5'
28844 5' -60.9 NC_006146.1 + 13829 0.67 0.663477
Target:  5'- -cCACCGGguCcaucagGCCggCCgGAGGGACCCc -3'
miRNA:   3'- gaGUGGUCguGa-----CGG--GG-CUCCCUGGG- -5'
28844 5' -60.9 NC_006146.1 + 14932 0.66 0.758752
Target:  5'- cCUCGCCcaucGCcUUGCCCUGcgcccGGGGCCa -3'
miRNA:   3'- -GAGUGGu---CGuGACGGGGCu----CCCUGGg -5'
28844 5' -60.9 NC_006146.1 + 14976 0.66 0.740261
Target:  5'- aUCGCCGGCuccGCcauccaaGCCuaGGGGaGACCCa -3'
miRNA:   3'- gAGUGGUCG---UGa------CGGggCUCC-CUGGG- -5'
28844 5' -60.9 NC_006146.1 + 16306 0.66 0.706148
Target:  5'- gCUgGCUGGCuCUGCCCCucucucuguccuccaGGGGGAaCCa -3'
miRNA:   3'- -GAgUGGUCGuGACGGGG---------------CUCCCUgGG- -5'
28844 5' -60.9 NC_006146.1 + 16505 0.67 0.692659
Target:  5'- cCUCcCCGGguCccagGCCagCCgGAGGGACCCc -3'
miRNA:   3'- -GAGuGGUCguGa---CGG--GG-CUCCCUGGG- -5'
28844 5' -60.9 NC_006146.1 + 16576 0.72 0.408965
Target:  5'- cCUCuCCAGgGCUucagagcccagaacGUCCCGAgaaGGGACCCg -3'
miRNA:   3'- -GAGuGGUCgUGA--------------CGGGGCU---CCCUGGG- -5'
28844 5' -60.9 NC_006146.1 + 16695 0.66 0.729939
Target:  5'- -aCGCCAGCcagacgcagguccACgacGCCCCGGGguggauacuguGGACCUa -3'
miRNA:   3'- gaGUGGUCG-------------UGa--CGGGGCUC-----------CCUGGG- -5'
28844 5' -60.9 NC_006146.1 + 16802 0.7 0.499482
Target:  5'- -cCACCAG-GCcGgCCgGAGGGACCCc -3'
miRNA:   3'- gaGUGGUCgUGaCgGGgCUCCCUGGG- -5'
28844 5' -60.9 NC_006146.1 + 16907 0.67 0.663477
Target:  5'- -cCACCGGguCcaucagGCCggCCgGAGGGACCCc -3'
miRNA:   3'- gaGUGGUCguGa-----CGG--GG-CUCCCUGGG- -5'
28844 5' -60.9 NC_006146.1 + 18009 0.66 0.758752
Target:  5'- cCUCGCCcaucGCcUUGCCCUGcgcccGGGGCCa -3'
miRNA:   3'- -GAGUGGu---CGuGACGGGGCu----CCCUGGg -5'
28844 5' -60.9 NC_006146.1 + 19384 0.66 0.706148
Target:  5'- gCUgGCUGGCuCUGCCCCucucucuguccuccaGGGGGAaCCa -3'
miRNA:   3'- -GAgUGGUCGuGACGGGG---------------CUCCCUgGG- -5'
28844 5' -60.9 NC_006146.1 + 19583 0.67 0.692659
Target:  5'- cCUCcCCGGguCccagGCCagCCgGAGGGACCCc -3'
miRNA:   3'- -GAGuGGUCguGa---CGG--GG-CUCCCUGGG- -5'
28844 5' -60.9 NC_006146.1 + 19654 0.72 0.408965
Target:  5'- cCUCuCCAGgGCUucagagcccagaacGUCCCGAgaaGGGACCCg -3'
miRNA:   3'- -GAGuGGUCgUGA--------------CGGGGCU---CCCUGGG- -5'
28844 5' -60.9 NC_006146.1 + 19880 0.7 0.499482
Target:  5'- -cCACCAG-GCcGgCCgGAGGGACCCc -3'
miRNA:   3'- gaGUGGUCgUGaCgGGgCUCCCUGGG- -5'
28844 5' -60.9 NC_006146.1 + 19984 0.67 0.663477
Target:  5'- -cCACCGGguCcaucagGCCggCCgGAGGGACCCc -3'
miRNA:   3'- gaGUGGUCguGa-----CGG--GG-CUCCCUGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.