Results 1 - 20 of 213 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28844 | 5' | -60.9 | NC_006146.1 | + | 20582 | 0.66 | 0.702304 |
Target: 5'- --aGCCGGC-CUGCgCCCGGGcgaGGACUa -3' miRNA: 3'- gagUGGUCGuGACG-GGGCUC---CCUGGg -5' |
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28844 | 5' | -60.9 | NC_006146.1 | + | 55582 | 0.66 | 0.730882 |
Target: 5'- aCUacaACCAGgAg-GCCgCCGAGGGGCUUa -3' miRNA: 3'- -GAg--UGGUCgUgaCGG-GGCUCCCUGGG- -5' |
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28844 | 5' | -60.9 | NC_006146.1 | + | 45439 | 0.66 | 0.730882 |
Target: 5'- aUCACCuGaagGCUGUCUUuGGGGACCUg -3' miRNA: 3'- gAGUGGuCg--UGACGGGGcUCCCUGGG- -5' |
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28844 | 5' | -60.9 | NC_006146.1 | + | 16695 | 0.66 | 0.729939 |
Target: 5'- -aCGCCAGCcagacgcagguccACgacGCCCCGGGguggauacuguGGACCUa -3' miRNA: 3'- gaGUGGUCG-------------UGa--CGGGGCUC-----------CCUGGG- -5' |
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28844 | 5' | -60.9 | NC_006146.1 | + | 115122 | 0.66 | 0.711895 |
Target: 5'- gCUgGCCAGCgugguggccucGCUGCCCCu---GGCCCg -3' miRNA: 3'- -GAgUGGUCG-----------UGACGGGGcuccCUGGG- -5' |
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28844 | 5' | -60.9 | NC_006146.1 | + | 91269 | 0.66 | 0.711895 |
Target: 5'- gCUCGCCGGcCugUGaCCCUGuccccGGGACg- -3' miRNA: 3'- -GAGUGGUC-GugAC-GGGGCu----CCCUGgg -5' |
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28844 | 5' | -60.9 | NC_006146.1 | + | 76571 | 0.66 | 0.711895 |
Target: 5'- --gACCAGgACaugGuCCCCGuGGGGACCg -3' miRNA: 3'- gagUGGUCgUGa--C-GGGGC-UCCCUGGg -5' |
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28844 | 5' | -60.9 | NC_006146.1 | + | 113772 | 0.66 | 0.711895 |
Target: 5'- -gCACCAGCc---CCCCGAaauuaGGGACCa -3' miRNA: 3'- gaGUGGUCGugacGGGGCU-----CCCUGGg -5' |
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28844 | 5' | -60.9 | NC_006146.1 | + | 113535 | 0.66 | 0.710939 |
Target: 5'- -cCACCGGCGCcaccGCCgcagccucccucaCCGAcacccGGGGCCCc -3' miRNA: 3'- gaGUGGUCGUGa---CGG-------------GGCU-----CCCUGGG- -5' |
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28844 | 5' | -60.9 | NC_006146.1 | + | 123855 | 0.66 | 0.730882 |
Target: 5'- -aCACCGGCGaccgGCCCCuucucgcacccAGGGcGCCCg -3' miRNA: 3'- gaGUGGUCGUga--CGGGGc----------UCCC-UGGG- -5' |
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28844 | 5' | -60.9 | NC_006146.1 | + | 37484 | 0.66 | 0.739327 |
Target: 5'- aUCACCGGCACUagguuCCaCCGAaGGuuauagaGACCCc -3' miRNA: 3'- gAGUGGUCGUGAc----GG-GGCU-CC-------CUGGG- -5' |
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28844 | 5' | -60.9 | NC_006146.1 | + | 5388 | 0.66 | 0.749554 |
Target: 5'- cCUCAUguG-GCUGCUCCGAGaauacGGugCCu -3' miRNA: 3'- -GAGUGguCgUGACGGGGCUC-----CCugGG- -5' |
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28844 | 5' | -60.9 | NC_006146.1 | + | 161424 | 0.66 | 0.758752 |
Target: 5'- --uGCCAG-GCgggugugGCCCCGcGGGaACCCa -3' miRNA: 3'- gagUGGUCgUGa------CGGGGCuCCC-UGGG- -5' |
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28844 | 5' | -60.9 | NC_006146.1 | + | 71343 | 0.66 | 0.758752 |
Target: 5'- cCUC-CUGGaccccgaucuCUGCCCCG-GGGGCUCg -3' miRNA: 3'- -GAGuGGUCgu--------GACGGGGCuCCCUGGG- -5' |
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28844 | 5' | -60.9 | NC_006146.1 | + | 157453 | 0.66 | 0.757837 |
Target: 5'- -cCACCcGgGCUGCCggggucccuCCGGcuggccuGGGACCCg -3' miRNA: 3'- gaGUGGuCgUGACGG---------GGCU-------CCCUGGG- -5' |
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28844 | 5' | -60.9 | NC_006146.1 | + | 154375 | 0.66 | 0.757837 |
Target: 5'- -cCACCcGgGCUGCCggggucccuCCGGcuggccuGGGACCCg -3' miRNA: 3'- gaGUGGuCgUGACGG---------GGCU-------CCCUGGG- -5' |
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28844 | 5' | -60.9 | NC_006146.1 | + | 151297 | 0.66 | 0.757837 |
Target: 5'- -cCACCcGgGCUGCCggggucccuCCGGcuggccuGGGACCCg -3' miRNA: 3'- gaGUGGuCgUGACGG---------GGCU-------CCCUGGG- -5' |
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28844 | 5' | -60.9 | NC_006146.1 | + | 148219 | 0.66 | 0.757837 |
Target: 5'- -cCACCcGgGCUGCCggggucccuCCGGcuggccuGGGACCCg -3' miRNA: 3'- gaGUGGuCgUGACGG---------GGCU-------CCCUGGG- -5' |
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28844 | 5' | -60.9 | NC_006146.1 | + | 145141 | 0.66 | 0.757837 |
Target: 5'- -cCACCcGgGCUGCCggggucccuCCGGcuggccuGGGACCCg -3' miRNA: 3'- gaGUGGuCgUGACGG---------GGCU-------CCCUGGG- -5' |
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28844 | 5' | -60.9 | NC_006146.1 | + | 142063 | 0.66 | 0.757837 |
Target: 5'- -cCACCcGgGCUGCCggggucccuCCGGcuggccuGGGACCCg -3' miRNA: 3'- gaGUGGuCgUGACGG---------GGCU-------CCCUGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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