miRNA display CGI


Results 21 - 40 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28847 3' -52.5 NC_006146.1 + 71156 0.75 0.662088
Target:  5'- uGGCCUCuUCCGAUGgguccgcguccucgGAGCACCGCGu -3'
miRNA:   3'- -UCGGAGuAGGCUGUa-------------CUUGUGGUGCu -5'
28847 3' -52.5 NC_006146.1 + 56776 1.09 0.006776
Target:  5'- gAGCCUCAUCCGACAUGAACACCACGAc -3'
miRNA:   3'- -UCGGAGUAGGCUGUACUUGUGGUGCU- -5'
28847 3' -52.5 NC_006146.1 + 90024 0.66 0.982609
Target:  5'- uGCCuUCAUCaacacccaGugAUG-GCACCGCGGg -3'
miRNA:   3'- uCGG-AGUAGg-------CugUACuUGUGGUGCU- -5'
28847 3' -52.5 NC_006146.1 + 95551 0.71 0.871984
Target:  5'- gGGCagCGUauGACAUGGACACCugGAc -3'
miRNA:   3'- -UCGgaGUAggCUGUACUUGUGGugCU- -5'
28847 3' -52.5 NC_006146.1 + 70281 0.71 0.882181
Target:  5'- gGGaCCaCggCCGACAUGAcaaacaucacaaaguACACCACGAg -3'
miRNA:   3'- -UC-GGaGuaGGCUGUACU---------------UGUGGUGCU- -5'
28847 3' -52.5 NC_006146.1 + 110279 0.7 0.893283
Target:  5'- gAGCCcCGUCUGcCAUGAugGCCuCGGc -3'
miRNA:   3'- -UCGGaGUAGGCuGUACUugUGGuGCU- -5'
28847 3' -52.5 NC_006146.1 + 115599 0.66 0.982609
Target:  5'- aGGCUUCGcccugcacuuuuUCCGGCugcUGccCACCGCGAg -3'
miRNA:   3'- -UCGGAGU------------AGGCUGu--ACuuGUGGUGCU- -5'
28847 3' -52.5 NC_006146.1 + 57906 0.67 0.974259
Target:  5'- cGCCUUGUCCagGACAUGcagagggcgcuggccGGCGCCGCc- -3'
miRNA:   3'- uCGGAGUAGG--CUGUAC---------------UUGUGGUGcu -5'
28847 3' -52.5 NC_006146.1 + 91016 0.67 0.970331
Target:  5'- cGCUUUAga-GGCAUGcuCACCACGAc -3'
miRNA:   3'- uCGGAGUaggCUGUACuuGUGGUGCU- -5'
28847 3' -52.5 NC_006146.1 + 121113 0.67 0.967589
Target:  5'- cGGaCCUCAacaUCCGGCAcgcgagcaucgagcgGGACuACCGCGAg -3'
miRNA:   3'- -UC-GGAGU---AGGCUGUa--------------CUUG-UGGUGCU- -5'
28847 3' -52.5 NC_006146.1 + 76110 0.67 0.967274
Target:  5'- gGGCCUCggCCuACGUGGACGuggcCCGCa- -3'
miRNA:   3'- -UCGGAGuaGGcUGUACUUGU----GGUGcu -5'
28847 3' -52.5 NC_006146.1 + 105046 0.68 0.964
Target:  5'- gGGCUgaGUCCGACuggGAcgGCACCACa- -3'
miRNA:   3'- -UCGGagUAGGCUGua-CU--UGUGGUGcu -5'
28847 3' -52.5 NC_006146.1 + 101102 0.68 0.960505
Target:  5'- cGGCCcaucaCGUCCcACGUGGGCAUCAuCGAu -3'
miRNA:   3'- -UCGGa----GUAGGcUGUACUUGUGGU-GCU- -5'
28847 3' -52.5 NC_006146.1 + 125907 0.68 0.955619
Target:  5'- gGGCCUCA-CCGAgcUGGAgagaaggguccggcCACCGCGGu -3'
miRNA:   3'- -UCGGAGUaGGCUguACUU--------------GUGGUGCU- -5'
28847 3' -52.5 NC_006146.1 + 20048 0.69 0.929439
Target:  5'- cGGCCUCAUCCccauuGACAUGuACGCUg--- -3'
miRNA:   3'- -UCGGAGUAGG-----CUGUACuUGUGGugcu -5'
28847 3' -52.5 NC_006146.1 + 103290 0.69 0.929439
Target:  5'- uGGCCUCggCCGACcucguGCGCUACGu -3'
miRNA:   3'- -UCGGAGuaGGCUGuacu-UGUGGUGCu -5'
28847 3' -52.5 NC_006146.1 + 19744 0.69 0.924026
Target:  5'- cGCCgCAUCCugcuGACGcUGGGCACCuGCGAa -3'
miRNA:   3'- uCGGaGUAGG----CUGU-ACUUGUGG-UGCU- -5'
28847 3' -52.5 NC_006146.1 + 68409 0.69 0.924026
Target:  5'- uGCCugacucugUCAUCCG-CGagacccUGAACGCCGCGGc -3'
miRNA:   3'- uCGG--------AGUAGGCuGU------ACUUGUGGUGCU- -5'
28847 3' -52.5 NC_006146.1 + 101044 0.69 0.918366
Target:  5'- gGGCCUCuacgcCCGACcucccGAGgGCCACGGg -3'
miRNA:   3'- -UCGGAGua---GGCUGua---CUUgUGGUGCU- -5'
28847 3' -52.5 NC_006146.1 + 55273 0.7 0.906309
Target:  5'- cGGCCaUCAcuaCUGACAUGGGCAuCCACa- -3'
miRNA:   3'- -UCGG-AGUa--GGCUGUACUUGU-GGUGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.