miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28847 3' -52.5 NC_006146.1 + 2941 0.72 0.84051
Target:  5'- gAGCUgggagUCAUCaGACAccaggcgcUGGACACCGCGAg -3'
miRNA:   3'- -UCGG-----AGUAGgCUGU--------ACUUGUGGUGCU- -5'
28847 3' -52.5 NC_006146.1 + 114386 0.67 0.973178
Target:  5'- aGGaCCUCcUCCGcgauggGCGUGGgcaGCACCAUGGg -3'
miRNA:   3'- -UC-GGAGuAGGC------UGUACU---UGUGGUGCU- -5'
28847 3' -52.5 NC_006146.1 + 160713 0.67 0.967274
Target:  5'- cGUCUCGUCCuGgGUGAACACaGCGu -3'
miRNA:   3'- uCGGAGUAGGcUgUACUUGUGgUGCu -5'
28847 3' -52.5 NC_006146.1 + 108120 0.68 0.964
Target:  5'- gGGCUUCuucUUCGGCuUGAGCACgAUGAg -3'
miRNA:   3'- -UCGGAGu--AGGCUGuACUUGUGgUGCU- -5'
28847 3' -52.5 NC_006146.1 + 93568 0.68 0.956781
Target:  5'- cGGCCUCGUCCuuCAccaucagccUGGGCAUgCGCGAc -3'
miRNA:   3'- -UCGGAGUAGGcuGU---------ACUUGUG-GUGCU- -5'
28847 3' -52.5 NC_006146.1 + 125082 0.68 0.948633
Target:  5'- cAGCUUCAUCCaGACuAUGGuguCGCCGgGGu -3'
miRNA:   3'- -UCGGAGUAGG-CUG-UACUu--GUGGUgCU- -5'
28847 3' -52.5 NC_006146.1 + 145486 0.66 0.986262
Target:  5'- cGUUUCAggUCCGGCGUGu---CCACGGa -3'
miRNA:   3'- uCGGAGU--AGGCUGUACuuguGGUGCU- -5'
28847 3' -52.5 NC_006146.1 + 117947 0.67 0.97827
Target:  5'- cGGCCUUcUCCGGCGaguccacGAuccuCGCCAUGAa -3'
miRNA:   3'- -UCGGAGuAGGCUGUa------CUu---GUGGUGCU- -5'
28847 3' -52.5 NC_006146.1 + 60073 0.67 0.973178
Target:  5'- cGCCUCGUCC--CGUGGA-GCUACGGg -3'
miRNA:   3'- uCGGAGUAGGcuGUACUUgUGGUGCU- -5'
28847 3' -52.5 NC_006146.1 + 109577 0.68 0.959412
Target:  5'- uGCCUCG-CCGGCuaggccacccgggcaGGACGCCGCGc -3'
miRNA:   3'- uCGGAGUaGGCUGua-------------CUUGUGGUGCu -5'
28847 3' -52.5 NC_006146.1 + 124272 0.71 0.871984
Target:  5'- uGCCUCAUCCGgaacgGCcgGGACAUCAacaGGc -3'
miRNA:   3'- uCGGAGUAGGC-----UGuaCUUGUGGUg--CU- -5'
28847 3' -52.5 NC_006146.1 + 82336 0.66 0.98053
Target:  5'- cAGCUccaUAUCCGGguuacgGAGCACCACGGa -3'
miRNA:   3'- -UCGGa--GUAGGCUgua---CUUGUGGUGCU- -5'
28847 3' -52.5 NC_006146.1 + 66500 0.69 0.929439
Target:  5'- cAGCCggaugCAccggCCGGCGUGAuacACGCCGCu- -3'
miRNA:   3'- -UCGGa----GUa---GGCUGUACU---UGUGGUGcu -5'
28847 3' -52.5 NC_006146.1 + 101035 0.67 0.970331
Target:  5'- uGGCCUCgGUCCuGCAUGccuGCGCCuGCGu -3'
miRNA:   3'- -UCGGAG-UAGGcUGUACu--UGUGG-UGCu -5'
28847 3' -52.5 NC_006146.1 + 48223 0.66 0.982609
Target:  5'- gGGCCUgGcgcgCCuGgGUGAGCGCCGCGc -3'
miRNA:   3'- -UCGGAgUa---GGcUgUACUUGUGGUGCu -5'
28847 3' -52.5 NC_006146.1 + 100277 0.68 0.9442
Target:  5'- gAGCCUCcuagcgggggCUGGCAggccuGCACCGCGAu -3'
miRNA:   3'- -UCGGAGua--------GGCUGUacu--UGUGGUGCU- -5'
28847 3' -52.5 NC_006146.1 + 68766 0.67 0.975822
Target:  5'- aAGCUUCAggcggugcgcUCUGuCAUcugGAACACCAUGAu -3'
miRNA:   3'- -UCGGAGU----------AGGCuGUA---CUUGUGGUGCU- -5'
28847 3' -52.5 NC_006146.1 + 125907 0.68 0.955619
Target:  5'- gGGCCUCA-CCGAgcUGGAgagaaggguccggcCACCGCGGu -3'
miRNA:   3'- -UCGGAGUaGGCUguACUU--------------GUGGUGCU- -5'
28847 3' -52.5 NC_006146.1 + 101102 0.68 0.960505
Target:  5'- cGGCCcaucaCGUCCcACGUGGGCAUCAuCGAu -3'
miRNA:   3'- -UCGGa----GUAGGcUGUACUUGUGGU-GCU- -5'
28847 3' -52.5 NC_006146.1 + 105046 0.68 0.964
Target:  5'- gGGCUgaGUCCGACuggGAcgGCACCACa- -3'
miRNA:   3'- -UCGGagUAGGCUGua-CU--UGUGGUGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.