Results 1 - 20 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28847 | 3' | -52.5 | NC_006146.1 | + | 2941 | 0.72 | 0.84051 |
Target: 5'- gAGCUgggagUCAUCaGACAccaggcgcUGGACACCGCGAg -3' miRNA: 3'- -UCGG-----AGUAGgCUGU--------ACUUGUGGUGCU- -5' |
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28847 | 3' | -52.5 | NC_006146.1 | + | 19744 | 0.69 | 0.924026 |
Target: 5'- cGCCgCAUCCugcuGACGcUGGGCACCuGCGAa -3' miRNA: 3'- uCGGaGUAGG----CUGU-ACUUGUGG-UGCU- -5' |
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28847 | 3' | -52.5 | NC_006146.1 | + | 20048 | 0.69 | 0.929439 |
Target: 5'- cGGCCUCAUCCccauuGACAUGuACGCUg--- -3' miRNA: 3'- -UCGGAGUAGG-----CUGUACuUGUGGugcu -5' |
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28847 | 3' | -52.5 | NC_006146.1 | + | 40896 | 0.69 | 0.934605 |
Target: 5'- gGGCCUCGUCugCGAUccGGGCGCgAUGGa -3' miRNA: 3'- -UCGGAGUAG--GCUGuaCUUGUGgUGCU- -5' |
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28847 | 3' | -52.5 | NC_006146.1 | + | 42689 | 0.66 | 0.987851 |
Target: 5'- cGCCgaaagagCGUCUGGCcc-GGCGCCGCGGc -3' miRNA: 3'- uCGGa------GUAGGCUGuacUUGUGGUGCU- -5' |
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28847 | 3' | -52.5 | NC_006146.1 | + | 48223 | 0.66 | 0.982609 |
Target: 5'- gGGCCUgGcgcgCCuGgGUGAGCGCCGCGc -3' miRNA: 3'- -UCGGAgUa---GGcUgUACUUGUGGUGCu -5' |
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28847 | 3' | -52.5 | NC_006146.1 | + | 52469 | 0.67 | 0.973178 |
Target: 5'- gGGCCUCAUCaacacgguccUGAgCGUGAagcuGCGCCAUGc -3' miRNA: 3'- -UCGGAGUAG----------GCU-GUACU----UGUGGUGCu -5' |
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28847 | 3' | -52.5 | NC_006146.1 | + | 52683 | 0.66 | 0.986262 |
Target: 5'- cGCCUC-UCCGAgAUGGuCGCUGCc- -3' miRNA: 3'- uCGGAGuAGGCUgUACUuGUGGUGcu -5' |
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28847 | 3' | -52.5 | NC_006146.1 | + | 55273 | 0.7 | 0.906309 |
Target: 5'- cGGCCaUCAcuaCUGACAUGGGCAuCCACa- -3' miRNA: 3'- -UCGG-AGUa--GGCUGUACUUGU-GGUGcu -5' |
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28847 | 3' | -52.5 | NC_006146.1 | + | 56776 | 1.09 | 0.006776 |
Target: 5'- gAGCCUCAUCCGACAUGAACACCACGAc -3' miRNA: 3'- -UCGGAGUAGGCUGUACUUGUGGUGCU- -5' |
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28847 | 3' | -52.5 | NC_006146.1 | + | 57906 | 0.67 | 0.974259 |
Target: 5'- cGCCUUGUCCagGACAUGcagagggcgcuggccGGCGCCGCc- -3' miRNA: 3'- uCGGAGUAGG--CUGUAC---------------UUGUGGUGcu -5' |
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28847 | 3' | -52.5 | NC_006146.1 | + | 60073 | 0.67 | 0.973178 |
Target: 5'- cGCCUCGUCC--CGUGGA-GCUACGGg -3' miRNA: 3'- uCGGAGUAGGcuGUACUUgUGGUGCU- -5' |
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28847 | 3' | -52.5 | NC_006146.1 | + | 60362 | 0.73 | 0.779177 |
Target: 5'- cAGCCUCuuugaacaggaggucUCCGAgGUGcAGCGCCugGAg -3' miRNA: 3'- -UCGGAGu--------------AGGCUgUAC-UUGUGGugCU- -5' |
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28847 | 3' | -52.5 | NC_006146.1 | + | 66500 | 0.69 | 0.929439 |
Target: 5'- cAGCCggaugCAccggCCGGCGUGAuacACGCCGCu- -3' miRNA: 3'- -UCGGa----GUa---GGCUGUACU---UGUGGUGcu -5' |
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28847 | 3' | -52.5 | NC_006146.1 | + | 68409 | 0.69 | 0.924026 |
Target: 5'- uGCCugacucugUCAUCCG-CGagacccUGAACGCCGCGGc -3' miRNA: 3'- uCGG--------AGUAGGCuGU------ACUUGUGGUGCU- -5' |
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28847 | 3' | -52.5 | NC_006146.1 | + | 68766 | 0.67 | 0.975822 |
Target: 5'- aAGCUUCAggcggugcgcUCUGuCAUcugGAACACCAUGAu -3' miRNA: 3'- -UCGGAGU----------AGGCuGUA---CUUGUGGUGCU- -5' |
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28847 | 3' | -52.5 | NC_006146.1 | + | 70281 | 0.71 | 0.882181 |
Target: 5'- gGGaCCaCggCCGACAUGAcaaacaucacaaaguACACCACGAg -3' miRNA: 3'- -UC-GGaGuaGGCUGUACU---------------UGUGGUGCU- -5' |
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28847 | 3' | -52.5 | NC_006146.1 | + | 71156 | 0.75 | 0.662088 |
Target: 5'- uGGCCUCuUCCGAUGgguccgcguccucgGAGCACCGCGu -3' miRNA: 3'- -UCGGAGuAGGCUGUa-------------CUUGUGGUGCu -5' |
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28847 | 3' | -52.5 | NC_006146.1 | + | 71298 | 0.72 | 0.84051 |
Target: 5'- cGCCUCGUgCuacGCA-GAGCACCGCGGc -3' miRNA: 3'- uCGGAGUAgGc--UGUaCUUGUGGUGCU- -5' |
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28847 | 3' | -52.5 | NC_006146.1 | + | 71535 | 0.66 | 0.984517 |
Target: 5'- gGGCCUCAacgCgCGGCccGGGCGCCgACGc -3' miRNA: 3'- -UCGGAGUa--G-GCUGuaCUUGUGG-UGCu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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