miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28847 3' -52.5 NC_006146.1 + 56776 1.09 0.006776
Target:  5'- gAGCCUCAUCCGACAUGAACACCACGAc -3'
miRNA:   3'- -UCGGAGUAGGCUGUACUUGUGGUGCU- -5'
28847 3' -52.5 NC_006146.1 + 71156 0.75 0.662088
Target:  5'- uGGCCUCuUCCGAUGgguccgcguccucgGAGCACCGCGu -3'
miRNA:   3'- -UCGGAGuAGGCUGUa-------------CUUGUGGUGCu -5'
28847 3' -52.5 NC_006146.1 + 60362 0.73 0.779177
Target:  5'- cAGCCUCuuugaacaggaggucUCCGAgGUGcAGCGCCugGAg -3'
miRNA:   3'- -UCGGAGu--------------AGGCUgUAC-UUGUGGugCU- -5'
28847 3' -52.5 NC_006146.1 + 2941 0.72 0.84051
Target:  5'- gAGCUgggagUCAUCaGACAccaggcgcUGGACACCGCGAg -3'
miRNA:   3'- -UCGG-----AGUAGgCUGU--------ACUUGUGGUGCU- -5'
28847 3' -52.5 NC_006146.1 + 71298 0.72 0.84051
Target:  5'- cGCCUCGUgCuacGCA-GAGCACCGCGGc -3'
miRNA:   3'- uCGGAGUAgGc--UGUaCUUGUGGUGCU- -5'
28847 3' -52.5 NC_006146.1 + 124226 0.71 0.84869
Target:  5'- -uCCUgGUCCGACGUGGAgGCCAaCGc -3'
miRNA:   3'- ucGGAgUAGGCUGUACUUgUGGU-GCu -5'
28847 3' -52.5 NC_006146.1 + 95551 0.71 0.871984
Target:  5'- gGGCagCGUauGACAUGGACACCugGAc -3'
miRNA:   3'- -UCGgaGUAggCUGUACUUGUGGugCU- -5'
28847 3' -52.5 NC_006146.1 + 124272 0.71 0.871984
Target:  5'- uGCCUCAUCCGgaacgGCcgGGACAUCAacaGGc -3'
miRNA:   3'- uCGGAGUAGGC-----UGuaCUUGUGGUg--CU- -5'
28847 3' -52.5 NC_006146.1 + 70281 0.71 0.882181
Target:  5'- gGGaCCaCggCCGACAUGAcaaacaucacaaaguACACCACGAg -3'
miRNA:   3'- -UC-GGaGuaGGCUGUACU---------------UGUGGUGCU- -5'
28847 3' -52.5 NC_006146.1 + 110279 0.7 0.893283
Target:  5'- gAGCCcCGUCUGcCAUGAugGCCuCGGc -3'
miRNA:   3'- -UCGGaGUAGGCuGUACUugUGGuGCU- -5'
28847 3' -52.5 NC_006146.1 + 55273 0.7 0.906309
Target:  5'- cGGCCaUCAcuaCUGACAUGGGCAuCCACa- -3'
miRNA:   3'- -UCGG-AGUa--GGCUGUACUUGU-GGUGcu -5'
28847 3' -52.5 NC_006146.1 + 101044 0.69 0.918366
Target:  5'- gGGCCUCuacgcCCGACcucccGAGgGCCACGGg -3'
miRNA:   3'- -UCGGAGua---GGCUGua---CUUgUGGUGCU- -5'
28847 3' -52.5 NC_006146.1 + 19744 0.69 0.924026
Target:  5'- cGCCgCAUCCugcuGACGcUGGGCACCuGCGAa -3'
miRNA:   3'- uCGGaGUAGG----CUGU-ACUUGUGG-UGCU- -5'
28847 3' -52.5 NC_006146.1 + 68409 0.69 0.924026
Target:  5'- uGCCugacucugUCAUCCG-CGagacccUGAACGCCGCGGc -3'
miRNA:   3'- uCGG--------AGUAGGCuGU------ACUUGUGGUGCU- -5'
28847 3' -52.5 NC_006146.1 + 20048 0.69 0.929439
Target:  5'- cGGCCUCAUCCccauuGACAUGuACGCUg--- -3'
miRNA:   3'- -UCGGAGUAGG-----CUGUACuUGUGGugcu -5'
28847 3' -52.5 NC_006146.1 + 103290 0.69 0.929439
Target:  5'- uGGCCUCggCCGACcucguGCGCUACGu -3'
miRNA:   3'- -UCGGAGuaGGCUGuacu-UGUGGUGCu -5'
28847 3' -52.5 NC_006146.1 + 66500 0.69 0.929439
Target:  5'- cAGCCggaugCAccggCCGGCGUGAuacACGCCGCu- -3'
miRNA:   3'- -UCGGa----GUa---GGCUGUACU---UGUGGUGcu -5'
28847 3' -52.5 NC_006146.1 + 131261 0.69 0.929439
Target:  5'- cAGCCUCAUCacgGGCGUGGACuuuuuaCACa- -3'
miRNA:   3'- -UCGGAGUAGg--CUGUACUUGug----GUGcu -5'
28847 3' -52.5 NC_006146.1 + 40896 0.69 0.934605
Target:  5'- gGGCCUCGUCugCGAUccGGGCGCgAUGGa -3'
miRNA:   3'- -UCGGAGUAG--GCUGuaCUUGUGgUGCU- -5'
28847 3' -52.5 NC_006146.1 + 100277 0.68 0.9442
Target:  5'- gAGCCUCcuagcgggggCUGGCAggccuGCACCGCGAu -3'
miRNA:   3'- -UCGGAGua--------GGCUGUacu--UGUGGUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.