miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28847 5' -56.1 NC_006146.1 + 56815 1.03 0.006579
Target:  5'- cUUCCAGGACAUGGUGCCGGAUGAGAUu -3'
miRNA:   3'- -AAGGUCCUGUACCACGGCCUACUCUA- -5'
28847 5' -56.1 NC_006146.1 + 71475 0.73 0.487777
Target:  5'- uUUCCAGGGCcugccguuuggccgGUGGUGCCuGGggGAGGc -3'
miRNA:   3'- -AAGGUCCUG--------------UACCACGG-CCuaCUCUa -5'
28847 5' -56.1 NC_006146.1 + 124307 0.72 0.539162
Target:  5'- cUUCCAGGGCcaggccaAUGGUGCUGGGUGucuuguAGAUu -3'
miRNA:   3'- -AAGGUCCUG-------UACCACGGCCUAC------UCUA- -5'
28847 5' -56.1 NC_006146.1 + 90049 0.72 0.54017
Target:  5'- --gCAGGAgGUGGUGCUGGA-GGGAg -3'
miRNA:   3'- aagGUCCUgUACCACGGCCUaCUCUa -5'
28847 5' -56.1 NC_006146.1 + 63829 0.71 0.643041
Target:  5'- aUCCAGGucuugcCGUGGcGCCGGGgaaUGAGAa -3'
miRNA:   3'- aAGGUCCu-----GUACCaCGGCCU---ACUCUa -5'
28847 5' -56.1 NC_006146.1 + 46219 0.7 0.65341
Target:  5'- gUUUCAGGACGaucucccugGGUGCUGGAcgGAGAUu -3'
miRNA:   3'- -AAGGUCCUGUa--------CCACGGCCUa-CUCUA- -5'
28847 5' -56.1 NC_006146.1 + 133065 0.7 0.684376
Target:  5'- cUCCAGGG--UGGUuCCGGGUGGGGg -3'
miRNA:   3'- aAGGUCCUguACCAcGGCCUACUCUa -5'
28847 5' -56.1 NC_006146.1 + 116885 0.7 0.704813
Target:  5'- cUCCGGaGGCGccaccUGGUGCCGGcccUGAGGg -3'
miRNA:   3'- aAGGUC-CUGU-----ACCACGGCCu--ACUCUa -5'
28847 5' -56.1 NC_006146.1 + 116822 0.69 0.714941
Target:  5'- gUCCAGGACGU-GUGCCGGGa----- -3'
miRNA:   3'- aAGGUCCUGUAcCACGGCCUacucua -5'
28847 5' -56.1 NC_006146.1 + 87352 0.69 0.724997
Target:  5'- -gCCGGGACAUGG-GaCUGGAUGAc-- -3'
miRNA:   3'- aaGGUCCUGUACCaC-GGCCUACUcua -5'
28847 5' -56.1 NC_006146.1 + 137003 0.69 0.744853
Target:  5'- cUCCAGGACggGGguagGCCGGGcacaccccgGGGAg -3'
miRNA:   3'- aAGGUCCUGuaCCa---CGGCCUa--------CUCUa -5'
28847 5' -56.1 NC_006146.1 + 51210 0.69 0.744853
Target:  5'- --aCAGGGCAUccacgaggccggGGUGgCGGGUGAGGUu -3'
miRNA:   3'- aagGUCCUGUA------------CCACgGCCUACUCUA- -5'
28847 5' -56.1 NC_006146.1 + 105185 0.68 0.773851
Target:  5'- gUCCAGuGACcgGG-GCCGGGgagccgGGGGUg -3'
miRNA:   3'- aAGGUC-CUGuaCCaCGGCCUa-----CUCUA- -5'
28847 5' -56.1 NC_006146.1 + 59663 0.68 0.786068
Target:  5'- aUCCGGGGCAguucugucgugagUcacggcggcaaugccGGUGCCGGAggcgGAGGUg -3'
miRNA:   3'- aAGGUCCUGU-------------A---------------CCACGGCCUa---CUCUA- -5'
28847 5' -56.1 NC_006146.1 + 50851 0.67 0.836533
Target:  5'- gUCCAGG-C-UGGUGggGGAUGAGAg -3'
miRNA:   3'- aAGGUCCuGuACCACggCCUACUCUa -5'
28847 5' -56.1 NC_006146.1 + 81645 0.67 0.836533
Target:  5'- -gCCGGGACGUuggggcucggagGGUGCCGGGgaagcggcGGGAc -3'
miRNA:   3'- aaGGUCCUGUA------------CCACGGCCUa-------CUCUa -5'
28847 5' -56.1 NC_006146.1 + 167751 0.67 0.836533
Target:  5'- -aUCAGGGCGcagGG-GCCGGGUGGGc- -3'
miRNA:   3'- aaGGUCCUGUa--CCaCGGCCUACUCua -5'
28847 5' -56.1 NC_006146.1 + 2845 0.67 0.84479
Target:  5'- -gCCAGGAgCggGGUGCCGGuUGuGGc -3'
miRNA:   3'- aaGGUCCU-GuaCCACGGCCuACuCUa -5'
28847 5' -56.1 NC_006146.1 + 72189 0.67 0.852847
Target:  5'- -aCgAGGACGcGGcgGCCGGAUGGGc- -3'
miRNA:   3'- aaGgUCCUGUaCCa-CGGCCUACUCua -5'
28847 5' -56.1 NC_006146.1 + 33345 0.67 0.852847
Target:  5'- cUCCGGGGCAgccgGGUGgCCGccGGUGGGu- -3'
miRNA:   3'- aAGGUCCUGUa---CCAC-GGC--CUACUCua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.