Results 21 - 26 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28847 | 5' | -56.1 | NC_006146.1 | + | 76572 | 0.66 | 0.868339 |
Target: 5'- -aCCAGGACAUGGU-CCccGUGGGGa -3' miRNA: 3'- aaGGUCCUGUACCAcGGccUACUCUa -5' |
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28847 | 5' | -56.1 | NC_006146.1 | + | 101259 | 0.66 | 0.868339 |
Target: 5'- ---gGGGACAUGGUGCUGGggGcAGu- -3' miRNA: 3'- aaggUCCUGUACCACGGCCuaC-UCua -5' |
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28847 | 5' | -56.1 | NC_006146.1 | + | 59537 | 0.66 | 0.882957 |
Target: 5'- cUCCAGGugGgGGUGCagcguggcgaUGGAgGAGAUg -3' miRNA: 3'- aAGGUCCugUaCCACG----------GCCUaCUCUA- -5' |
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28847 | 5' | -56.1 | NC_006146.1 | + | 98220 | 0.66 | 0.882957 |
Target: 5'- uUUCCAGgGGCAUGGcguaGCCgGGGUGcAGGg -3' miRNA: 3'- -AAGGUC-CUGUACCa---CGG-CCUAC-UCUa -5' |
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28847 | 5' | -56.1 | NC_006146.1 | + | 106982 | 0.66 | 0.889926 |
Target: 5'- -cCCAGuaGGCAcaagGGUGCCucguGGAUGAGAc -3' miRNA: 3'- aaGGUC--CUGUa---CCACGG----CCUACUCUa -5' |
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28847 | 5' | -56.1 | NC_006146.1 | + | 114115 | 0.66 | 0.889926 |
Target: 5'- aUUCaaaAGGuCGUGGUGUucauguCGGAUGAGGc -3' miRNA: 3'- -AAGg--UCCuGUACCACG------GCCUACUCUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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