Results 41 - 60 of 61 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28852 | 3' | -50.3 | NC_006146.1 | + | 67860 | 0.66 | 0.995306 |
Target: 5'- uCCUAacggcGCUGUau-GAGAGGCCCUgcaaGAGg -3' miRNA: 3'- -GGGU-----CGACAcuuCUCUUCGGGAa---UUC- -5' |
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28852 | 3' | -50.3 | NC_006146.1 | + | 121361 | 0.66 | 0.995306 |
Target: 5'- gCCGGC-GUGGccuccgcccccAGAGGAGCCCc---- -3' miRNA: 3'- gGGUCGaCACU-----------UCUCUUCGGGaauuc -5' |
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28852 | 3' | -50.3 | NC_006146.1 | + | 106941 | 0.66 | 0.995988 |
Target: 5'- gCCGGCUGagugugcuuucUGGAGAGggGCUa----- -3' miRNA: 3'- gGGUCGAC-----------ACUUCUCuuCGGgaauuc -5' |
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28852 | 3' | -50.3 | NC_006146.1 | + | 43982 | 0.66 | 0.99711 |
Target: 5'- gCCAGCg--GGAGAGGAGgCUgagUAGGc -3' miRNA: 3'- gGGUCGacaCUUCUCUUCgGGa--AUUC- -5' |
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28852 | 3' | -50.3 | NC_006146.1 | + | 28817 | 0.66 | 0.997565 |
Target: 5'- gCCCAGCUuuccguguuucaGUGGAGAGGGuGCUgUcaUAAGc -3' miRNA: 3'- -GGGUCGA------------CACUUCUCUU-CGGgA--AUUC- -5' |
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28852 | 3' | -50.3 | NC_006146.1 | + | 92243 | 0.67 | 0.988991 |
Target: 5'- gCCCGGcCUGUGGcugcugcugGGGGGcgGGCCCggccUGGGg -3' miRNA: 3'- -GGGUC-GACACU---------UCUCU--UCGGGa---AUUC- -5' |
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28852 | 3' | -50.3 | NC_006146.1 | + | 158649 | 0.67 | 0.988555 |
Target: 5'- cCCCAGguucCUGUGAAGAGcAagaagcgugugucuAGCCCUcccaugauUGAGa -3' miRNA: 3'- -GGGUC----GACACUUCUC-U--------------UCGGGA--------AUUC- -5' |
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28852 | 3' | -50.3 | NC_006146.1 | + | 123042 | 0.68 | 0.987484 |
Target: 5'- gCCCAgguccgggcGCUG-GAGGAGAGgGUCCUcGAGa -3' miRNA: 3'- -GGGU---------CGACaCUUCUCUU-CGGGAaUUC- -5' |
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28852 | 3' | -50.3 | NC_006146.1 | + | 27091 | 0.76 | 0.70781 |
Target: 5'- aCUAGCUGUGAGccggugaccGGGGAGCCCUg--- -3' miRNA: 3'- gGGUCGACACUU---------CUCUUCGGGAauuc -5' |
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28852 | 3' | -50.3 | NC_006146.1 | + | 83101 | 0.7 | 0.946314 |
Target: 5'- uCCCAGaggGUGAGGAGcGGCCUg---- -3' miRNA: 3'- -GGGUCga-CACUUCUCuUCGGGaauuc -5' |
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28852 | 3' | -50.3 | NC_006146.1 | + | 142084 | 0.7 | 0.962466 |
Target: 5'- cUCCGGCUGgccuggGAcccGGGGAGGCaCCcUGAGg -3' miRNA: 3'- -GGGUCGACa-----CU---UCUCUUCG-GGaAUUC- -5' |
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28852 | 3' | -50.3 | NC_006146.1 | + | 145162 | 0.7 | 0.962466 |
Target: 5'- cUCCGGCUGgccuggGAcccGGGGAGGCaCCcUGAGg -3' miRNA: 3'- -GGGUCGACa-----CU---UCUCUUCG-GGaAUUC- -5' |
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28852 | 3' | -50.3 | NC_006146.1 | + | 148240 | 0.7 | 0.962466 |
Target: 5'- cUCCGGCUGgccuggGAcccGGGGAGGCaCCcUGAGg -3' miRNA: 3'- -GGGUCGACa-----CU---UCUCUUCG-GGaAUUC- -5' |
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28852 | 3' | -50.3 | NC_006146.1 | + | 151318 | 0.7 | 0.962466 |
Target: 5'- cUCCGGCUGgccuggGAcccGGGGAGGCaCCcUGAGg -3' miRNA: 3'- -GGGUCGACa-----CU---UCUCUUCG-GGaAUUC- -5' |
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28852 | 3' | -50.3 | NC_006146.1 | + | 157474 | 0.7 | 0.962466 |
Target: 5'- cUCCGGCUGgccuggGAcccGGGGAGGCaCCcUGAGg -3' miRNA: 3'- -GGGUCGACa-----CU---UCUCUUCG-GGaAUUC- -5' |
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28852 | 3' | -50.3 | NC_006146.1 | + | 38052 | 0.7 | 0.962466 |
Target: 5'- cCCCAccucucCUGUGAuGAGAGGCCUguacUAAGa -3' miRNA: 3'- -GGGUc-----GACACUuCUCUUCGGGa---AUUC- -5' |
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28852 | 3' | -50.3 | NC_006146.1 | + | 101636 | 0.69 | 0.969117 |
Target: 5'- gCCAGCUGcaucuucGAGGAGGacccggaccuGGCCCUgggGGGa -3' miRNA: 3'- gGGUCGACa------CUUCUCU----------UCGGGAa--UUC- -5' |
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28852 | 3' | -50.3 | NC_006146.1 | + | 124590 | 0.69 | 0.969117 |
Target: 5'- gCCCGGCcGagagGAAGAGggGCUCg---- -3' miRNA: 3'- -GGGUCGaCa---CUUCUCuuCGGGaauuc -5' |
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28852 | 3' | -50.3 | NC_006146.1 | + | 103633 | 0.69 | 0.977451 |
Target: 5'- --aAGCUGgcacgcgGAGGAGggGCCCg---- -3' miRNA: 3'- gggUCGACa------CUUCUCuuCGGGaauuc -5' |
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28852 | 3' | -50.3 | NC_006146.1 | + | 43650 | 0.68 | 0.979821 |
Target: 5'- gCCGcCUGgGGAGAGggGCCCg---- -3' miRNA: 3'- gGGUcGACaCUUCUCuuCGGGaauuc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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