miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28852 3' -50.3 NC_006146.1 + 145264 0.68 0.979821
Target:  5'- aCCAGCgccGUGAucuuggagcugAGGGggGCCUcgUAGGu -3'
miRNA:   3'- gGGUCGa--CACU-----------UCUCuuCGGGa-AUUC- -5'
28852 3' -50.3 NC_006146.1 + 33389 0.66 0.994533
Target:  5'- gCCCcGCUccggGUGggGGGuGGCCCgccUGGGc -3'
miRNA:   3'- -GGGuCGA----CACuuCUCuUCGGGa--AUUC- -5'
28852 3' -50.3 NC_006146.1 + 115242 0.67 0.991579
Target:  5'- gCCCAGCU-----GAGAGGCCCa---- -3'
miRNA:   3'- -GGGUCGAcacuuCUCUUCGGGaauuc -5'
28852 3' -50.3 NC_006146.1 + 51828 0.68 0.982001
Target:  5'- cCCCggGGCggcGUGGAGGGggGCUCg---- -3'
miRNA:   3'- -GGG--UCGa--CACUUCUCuuCGGGaauuc -5'
28852 3' -50.3 NC_006146.1 + 133005 0.66 0.99445
Target:  5'- cCCCAGCgccGUGAAGgcaGGAcucucccAGCCCg---- -3'
miRNA:   3'- -GGGUCGa--CACUUC---UCU-------UCGGGaauuc -5'
28852 3' -50.3 NC_006146.1 + 92243 0.67 0.988991
Target:  5'- gCCCGGcCUGUGGcugcugcugGGGGGcgGGCCCggccUGGGg -3'
miRNA:   3'- -GGGUC-GACACU---------UCUCU--UCGGGa---AUUC- -5'
28852 3' -50.3 NC_006146.1 + 43982 0.66 0.99711
Target:  5'- gCCAGCg--GGAGAGGAGgCUgagUAGGc -3'
miRNA:   3'- gGGUCGacaCUUCUCUUCgGGa--AUUC- -5'
28852 3' -50.3 NC_006146.1 + 27091 0.76 0.70781
Target:  5'- aCUAGCUGUGAGccggugaccGGGGAGCCCUg--- -3'
miRNA:   3'- gGGUCGACACUU---------CUCUUCGGGAauuc -5'
28852 3' -50.3 NC_006146.1 + 83101 0.7 0.946314
Target:  5'- uCCCAGaggGUGAGGAGcGGCCUg---- -3'
miRNA:   3'- -GGGUCga-CACUUCUCuUCGGGaauuc -5'
28852 3' -50.3 NC_006146.1 + 142084 0.7 0.962466
Target:  5'- cUCCGGCUGgccuggGAcccGGGGAGGCaCCcUGAGg -3'
miRNA:   3'- -GGGUCGACa-----CU---UCUCUUCG-GGaAUUC- -5'
28852 3' -50.3 NC_006146.1 + 111802 0.67 0.988991
Target:  5'- cCCUGGCaugGUGAcggagaggcgAGGGAGGCCCa---- -3'
miRNA:   3'- -GGGUCGa--CACU----------UCUCUUCGGGaauuc -5'
28852 3' -50.3 NC_006146.1 + 137688 0.67 0.991579
Target:  5'- aCCCGGCUGccccGGAGcaccAGGAGCaCCcgGAGg -3'
miRNA:   3'- -GGGUCGACa---CUUC----UCUUCG-GGaaUUC- -5'
28852 3' -50.3 NC_006146.1 + 143258 0.67 0.994022
Target:  5'- cCCCAGguucCUGUGAAGAGcAagaagcguguguacuAGCCCUc--- -3'
miRNA:   3'- -GGGUC----GACACUUCUC-U---------------UCGGGAauuc -5'
28852 3' -50.3 NC_006146.1 + 67860 0.66 0.995306
Target:  5'- uCCUAacggcGCUGUau-GAGAGGCCCUgcaaGAGg -3'
miRNA:   3'- -GGGU-----CGACAcuuCUCUUCGGGAa---UUC- -5'
28852 3' -50.3 NC_006146.1 + 38052 0.7 0.962466
Target:  5'- cCCCAccucucCUGUGAuGAGAGGCCUguacUAAGa -3'
miRNA:   3'- -GGGUc-----GACACUuCUCUUCGGGa---AUUC- -5'
28852 3' -50.3 NC_006146.1 + 157474 0.7 0.962466
Target:  5'- cUCCGGCUGgccuggGAcccGGGGAGGCaCCcUGAGg -3'
miRNA:   3'- -GGGUCGACa-----CU---UCUCUUCG-GGaAUUC- -5'
28852 3' -50.3 NC_006146.1 + 154396 0.7 0.962466
Target:  5'- cUCCGGCUGgccuggGAcccGGGGAGGCaCCcUGAGg -3'
miRNA:   3'- -GGGUCGACa-----CU---UCUCUUCG-GGaAUUC- -5'
28852 3' -50.3 NC_006146.1 + 151318 0.7 0.962466
Target:  5'- cUCCGGCUGgccuggGAcccGGGGAGGCaCCcUGAGg -3'
miRNA:   3'- -GGGUCGACa-----CU---UCUCUUCG-GGaAUUC- -5'
28852 3' -50.3 NC_006146.1 + 148240 0.7 0.962466
Target:  5'- cUCCGGCUGgccuggGAcccGGGGAGGCaCCcUGAGg -3'
miRNA:   3'- -GGGUCGACa-----CU---UCUCUUCG-GGaAUUC- -5'
28852 3' -50.3 NC_006146.1 + 145162 0.7 0.962466
Target:  5'- cUCCGGCUGgccuggGAcccGGGGAGGCaCCcUGAGg -3'
miRNA:   3'- -GGGUCGACa-----CU---UCUCUUCG-GGaAUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.