miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28852 3' -50.3 NC_006146.1 + 41585 0.73 0.858076
Target:  5'- aCUGGCUGgccGAggcGGAGAGGCCCggGGGg -3'
miRNA:   3'- gGGUCGACa--CU---UCUCUUCGGGaaUUC- -5'
28852 3' -50.3 NC_006146.1 + 33143 0.66 0.994533
Target:  5'- gCCCcGCUccggGUGggGGGuGGCCCggcUGGGc -3'
miRNA:   3'- -GGGuCGA----CACuuCUCuUCGGGa--AUUC- -5'
28852 3' -50.3 NC_006146.1 + 33389 0.66 0.994533
Target:  5'- gCCCcGCUccggGUGggGGGuGGCCCgccUGGGc -3'
miRNA:   3'- -GGGuCGA----CACuuCUCuUCGGGa--AUUC- -5'
28852 3' -50.3 NC_006146.1 + 71118 0.66 0.997565
Target:  5'- aCUAGCa-UGGAGAGAuuggAGCCCUcGGGc -3'
miRNA:   3'- gGGUCGacACUUCUCU----UCGGGAaUUC- -5'
28852 3' -50.3 NC_006146.1 + 47064 0.69 0.965906
Target:  5'- gCCGGUgucgGUGAGGGGgcGCCUgacgAAGa -3'
miRNA:   3'- gGGUCGa---CACUUCUCuuCGGGaa--UUC- -5'
28852 3' -50.3 NC_006146.1 + 117581 0.69 0.977451
Target:  5'- gCCGGCgUGUGGAGucGGggGUgacagagaaCCUUGAGg -3'
miRNA:   3'- gGGUCG-ACACUUC--UCuuCG---------GGAAUUC- -5'
28852 3' -50.3 NC_006146.1 + 51828 0.68 0.982001
Target:  5'- cCCCggGGCggcGUGGAGGGggGCUCg---- -3'
miRNA:   3'- -GGG--UCGa--CACUUCUCuuCGGGaauuc -5'
28852 3' -50.3 NC_006146.1 + 166762 0.68 0.985823
Target:  5'- aCCAGCaGUGgcGAGggGaCCagGAGg -3'
miRNA:   3'- gGGUCGaCACuuCUCuuCgGGaaUUC- -5'
28852 3' -50.3 NC_006146.1 + 88833 0.67 0.988991
Target:  5'- uCCCAGCaccUGAAGc-AGGCCCUUGGu -3'
miRNA:   3'- -GGGUCGac-ACUUCucUUCGGGAAUUc -5'
28852 3' -50.3 NC_006146.1 + 133526 0.67 0.99366
Target:  5'- -aCAGuCUG-GAAGuGAGGCCCUUu-- -3'
miRNA:   3'- ggGUC-GACaCUUCuCUUCGGGAAuuc -5'
28852 3' -50.3 NC_006146.1 + 86300 0.67 0.991579
Target:  5'- gUCCGGCaUGgcUGGAGuaGGAGGCCCUg--- -3'
miRNA:   3'- -GGGUCG-AC--ACUUC--UCUUCGGGAauuc -5'
28852 3' -50.3 NC_006146.1 + 90543 0.68 0.987484
Target:  5'- uCCCGGagcgGUGGAGcaGGGCCCggGAGa -3'
miRNA:   3'- -GGGUCga--CACUUCucUUCGGGaaUUC- -5'
28852 3' -50.3 NC_006146.1 + 137990 0.7 0.95072
Target:  5'- gCCCGGCgggGUGggGGGugcGCCCc---- -3'
miRNA:   3'- -GGGUCGa--CACuuCUCuu-CGGGaauuc -5'
28852 3' -50.3 NC_006146.1 + 115242 0.67 0.991579
Target:  5'- gCCCAGCU-----GAGAGGCCCa---- -3'
miRNA:   3'- -GGGUCGAcacuuCUCUUCGGGaauuc -5'
28852 3' -50.3 NC_006146.1 + 3683 0.7 0.954878
Target:  5'- cCCCAGC-GUGggGAGcaaaGAGCaCCUg--- -3'
miRNA:   3'- -GGGUCGaCACuuCUC----UUCG-GGAauuc -5'
28852 3' -50.3 NC_006146.1 + 70544 0.68 0.987484
Target:  5'- gCCCGGCUGgcucgucuUGAGucuGAGAauaaGGCCCUgAAGc -3'
miRNA:   3'- -GGGUCGAC--------ACUU---CUCU----UCGGGAaUUC- -5'
28852 3' -50.3 NC_006146.1 + 69958 0.67 0.991579
Target:  5'- gCCuGCUG-GAAGAGGAGCUUg---- -3'
miRNA:   3'- gGGuCGACaCUUCUCUUCGGGaauuc -5'
28852 3' -50.3 NC_006146.1 + 33267 0.66 0.994533
Target:  5'- gCCCcGCUccggGUGggGGGuGGCCCggcUGGGc -3'
miRNA:   3'- -GGGuCGA----CACuuCUCuUCGGGa--AUUC- -5'
28852 3' -50.3 NC_006146.1 + 34159 0.7 0.962466
Target:  5'- cCCCGGCgaggGUGggGGGugcGCCCc---- -3'
miRNA:   3'- -GGGUCGa---CACuuCUCuu-CGGGaauuc -5'
28852 3' -50.3 NC_006146.1 + 145264 0.68 0.979821
Target:  5'- aCCAGCgccGUGAucuuggagcugAGGGggGCCUcgUAGGu -3'
miRNA:   3'- gGGUCGa--CACU-----------UCUCuuCGGGa-AUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.