miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28852 3' -50.3 NC_006146.1 + 51879 0.97 0.059323
Target:  5'- aCCCAGCUGUGAAGAGAA-CCCUUAAGc -3'
miRNA:   3'- -GGGUCGACACUUCUCUUcGGGAAUUC- -5'
28852 3' -50.3 NC_006146.1 + 123579 0.78 0.602237
Target:  5'- gCCCGGCUG-GAGGccaucauccaGGAGGCCCggGAGg -3'
miRNA:   3'- -GGGUCGACaCUUC----------UCUUCGGGaaUUC- -5'
28852 3' -50.3 NC_006146.1 + 2130 0.77 0.686934
Target:  5'- gCCCAcCcGUGAGGGGGAGCCCgggAAGa -3'
miRNA:   3'- -GGGUcGaCACUUCUCUUCGGGaa-UUC- -5'
28852 3' -50.3 NC_006146.1 + 267 0.77 0.686934
Target:  5'- gCCCAcCcGUGAGGGGGAGCCCgggAAGa -3'
miRNA:   3'- -GGGUcGaCACUUCUCUUCGGGaa-UUC- -5'
28852 3' -50.3 NC_006146.1 + 101246 0.77 0.686934
Target:  5'- cCCCAGCUG-GAGGAGGaccgcgGGCCCa---- -3'
miRNA:   3'- -GGGUCGACaCUUCUCU------UCGGGaauuc -5'
28852 3' -50.3 NC_006146.1 + 3062 0.77 0.686934
Target:  5'- gCCCAcCcGUGAGGGGGAGCCCgggAAGa -3'
miRNA:   3'- -GGGUcGaCACUUCUCUUCGGGaa-UUC- -5'
28852 3' -50.3 NC_006146.1 + 1198 0.77 0.686934
Target:  5'- gCCCAcCcGUGAGGGGGAGCCCgggAAGa -3'
miRNA:   3'- -GGGUcGaCACUUCUCUUCGGGaa-UUC- -5'
28852 3' -50.3 NC_006146.1 + 27091 0.76 0.70781
Target:  5'- aCUAGCUGUGAGccggugaccGGGGAGCCCUg--- -3'
miRNA:   3'- gGGUCGACACUU---------CUCUUCGGGAauuc -5'
28852 3' -50.3 NC_006146.1 + 41585 0.73 0.858076
Target:  5'- aCUGGCUGgccGAggcGGAGAGGCCCggGGGg -3'
miRNA:   3'- gGGUCGACa--CU---UCUCUUCGGGaaUUC- -5'
28852 3' -50.3 NC_006146.1 + 83101 0.7 0.946314
Target:  5'- uCCCAGaggGUGAGGAGcGGCCUg---- -3'
miRNA:   3'- -GGGUCga-CACUUCUCuUCGGGaauuc -5'
28852 3' -50.3 NC_006146.1 + 137990 0.7 0.95072
Target:  5'- gCCCGGCgggGUGggGGGugcGCCCc---- -3'
miRNA:   3'- -GGGUCGa--CACuuCUCuu-CGGGaauuc -5'
28852 3' -50.3 NC_006146.1 + 3683 0.7 0.954878
Target:  5'- cCCCAGC-GUGggGAGcaaaGAGCaCCUg--- -3'
miRNA:   3'- -GGGUCGaCACuuCUC----UUCG-GGAauuc -5'
28852 3' -50.3 NC_006146.1 + 34159 0.7 0.962466
Target:  5'- cCCCGGCgaggGUGggGGGugcGCCCc---- -3'
miRNA:   3'- -GGGUCGa---CACuuCUCuu-CGGGaauuc -5'
28852 3' -50.3 NC_006146.1 + 38052 0.7 0.962466
Target:  5'- cCCCAccucucCUGUGAuGAGAGGCCUguacUAAGa -3'
miRNA:   3'- -GGGUc-----GACACUuCUCUUCGGGa---AUUC- -5'
28852 3' -50.3 NC_006146.1 + 142084 0.7 0.962466
Target:  5'- cUCCGGCUGgccuggGAcccGGGGAGGCaCCcUGAGg -3'
miRNA:   3'- -GGGUCGACa-----CU---UCUCUUCG-GGaAUUC- -5'
28852 3' -50.3 NC_006146.1 + 145162 0.7 0.962466
Target:  5'- cUCCGGCUGgccuggGAcccGGGGAGGCaCCcUGAGg -3'
miRNA:   3'- -GGGUCGACa-----CU---UCUCUUCG-GGaAUUC- -5'
28852 3' -50.3 NC_006146.1 + 148240 0.7 0.962466
Target:  5'- cUCCGGCUGgccuggGAcccGGGGAGGCaCCcUGAGg -3'
miRNA:   3'- -GGGUCGACa-----CU---UCUCUUCG-GGaAUUC- -5'
28852 3' -50.3 NC_006146.1 + 151318 0.7 0.962466
Target:  5'- cUCCGGCUGgccuggGAcccGGGGAGGCaCCcUGAGg -3'
miRNA:   3'- -GGGUCGACa-----CU---UCUCUUCG-GGaAUUC- -5'
28852 3' -50.3 NC_006146.1 + 154396 0.7 0.962466
Target:  5'- cUCCGGCUGgccuggGAcccGGGGAGGCaCCcUGAGg -3'
miRNA:   3'- -GGGUCGACa-----CU---UCUCUUCG-GGaAUUC- -5'
28852 3' -50.3 NC_006146.1 + 157474 0.7 0.962466
Target:  5'- cUCCGGCUGgccuggGAcccGGGGAGGCaCCcUGAGg -3'
miRNA:   3'- -GGGUCGACa-----CU---UCUCUUCG-GGaAUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.