miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28852 3' -50.3 NC_006146.1 + 267 0.77 0.686934
Target:  5'- gCCCAcCcGUGAGGGGGAGCCCgggAAGa -3'
miRNA:   3'- -GGGUcGaCACUUCUCUUCGGGaa-UUC- -5'
28852 3' -50.3 NC_006146.1 + 1198 0.77 0.686934
Target:  5'- gCCCAcCcGUGAGGGGGAGCCCgggAAGa -3'
miRNA:   3'- -GGGUcGaCACUUCUCUUCGGGaa-UUC- -5'
28852 3' -50.3 NC_006146.1 + 2130 0.77 0.686934
Target:  5'- gCCCAcCcGUGAGGGGGAGCCCgggAAGa -3'
miRNA:   3'- -GGGUcGaCACUUCUCUUCGGGaa-UUC- -5'
28852 3' -50.3 NC_006146.1 + 3062 0.77 0.686934
Target:  5'- gCCCAcCcGUGAGGGGGAGCCCgggAAGa -3'
miRNA:   3'- -GGGUcGaCACUUCUCUUCGGGaa-UUC- -5'
28852 3' -50.3 NC_006146.1 + 3683 0.7 0.954878
Target:  5'- cCCCAGC-GUGggGAGcaaaGAGCaCCUg--- -3'
miRNA:   3'- -GGGUCGaCACuuCUC----UUCG-GGAauuc -5'
28852 3' -50.3 NC_006146.1 + 27091 0.76 0.70781
Target:  5'- aCUAGCUGUGAGccggugaccGGGGAGCCCUg--- -3'
miRNA:   3'- gGGUCGACACUU---------CUCUUCGGGAauuc -5'
28852 3' -50.3 NC_006146.1 + 28817 0.66 0.997565
Target:  5'- gCCCAGCUuuccguguuucaGUGGAGAGGGuGCUgUcaUAAGc -3'
miRNA:   3'- -GGGUCGA------------CACUUCUCUU-CGGgA--AUUC- -5'
28852 3' -50.3 NC_006146.1 + 33143 0.66 0.994533
Target:  5'- gCCCcGCUccggGUGggGGGuGGCCCggcUGGGc -3'
miRNA:   3'- -GGGuCGA----CACuuCUCuUCGGGa--AUUC- -5'
28852 3' -50.3 NC_006146.1 + 33267 0.66 0.994533
Target:  5'- gCCCcGCUccggGUGggGGGuGGCCCggcUGGGc -3'
miRNA:   3'- -GGGuCGA----CACuuCUCuUCGGGa--AUUC- -5'
28852 3' -50.3 NC_006146.1 + 33389 0.66 0.994533
Target:  5'- gCCCcGCUccggGUGggGGGuGGCCCgccUGGGc -3'
miRNA:   3'- -GGGuCGA----CACuuCUCuUCGGGa--AUUC- -5'
28852 3' -50.3 NC_006146.1 + 34159 0.7 0.962466
Target:  5'- cCCCGGCgaggGUGggGGGugcGCCCc---- -3'
miRNA:   3'- -GGGUCGa---CACuuCUCuu-CGGGaauuc -5'
28852 3' -50.3 NC_006146.1 + 38052 0.7 0.962466
Target:  5'- cCCCAccucucCUGUGAuGAGAGGCCUguacUAAGa -3'
miRNA:   3'- -GGGUc-----GACACUuCUCUUCGGGa---AUUC- -5'
28852 3' -50.3 NC_006146.1 + 41227 0.66 0.997565
Target:  5'- -gCGGCgcUGAAGAGAccGGCCCUg--- -3'
miRNA:   3'- ggGUCGacACUUCUCU--UCGGGAauuc -5'
28852 3' -50.3 NC_006146.1 + 41585 0.73 0.858076
Target:  5'- aCUGGCUGgccGAggcGGAGAGGCCCggGGGg -3'
miRNA:   3'- gGGUCGACa--CU---UCUCUUCGGGaaUUC- -5'
28852 3' -50.3 NC_006146.1 + 43650 0.68 0.979821
Target:  5'- gCCGcCUGgGGAGAGggGCCCg---- -3'
miRNA:   3'- gGGUcGACaCUUCUCuuCGGGaauuc -5'
28852 3' -50.3 NC_006146.1 + 43982 0.66 0.99711
Target:  5'- gCCAGCg--GGAGAGGAGgCUgagUAGGc -3'
miRNA:   3'- gGGUCGacaCUUCUCUUCgGGa--AUUC- -5'
28852 3' -50.3 NC_006146.1 + 47064 0.69 0.965906
Target:  5'- gCCGGUgucgGUGAGGGGgcGCCUgacgAAGa -3'
miRNA:   3'- gGGUCGa---CACUUCUCuuCGGGaa--UUC- -5'
28852 3' -50.3 NC_006146.1 + 51828 0.68 0.982001
Target:  5'- cCCCggGGCggcGUGGAGGGggGCUCg---- -3'
miRNA:   3'- -GGG--UCGa--CACUUCUCuuCGGGaauuc -5'
28852 3' -50.3 NC_006146.1 + 51879 0.97 0.059323
Target:  5'- aCCCAGCUGUGAAGAGAA-CCCUUAAGc -3'
miRNA:   3'- -GGGUCGACACUUCUCUUcGGGAAUUC- -5'
28852 3' -50.3 NC_006146.1 + 67860 0.66 0.995306
Target:  5'- uCCUAacggcGCUGUau-GAGAGGCCCUgcaaGAGg -3'
miRNA:   3'- -GGGU-----CGACAcuuCUCUUCGGGAa---UUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.