miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28852 3' -50.3 NC_006146.1 + 167646 0.66 0.995306
Target:  5'- gCCCGGCgcGUGccG-GggGCCCggGGGc -3'
miRNA:   3'- -GGGUCGa-CACuuCuCuuCGGGaaUUC- -5'
28852 3' -50.3 NC_006146.1 + 166762 0.68 0.985823
Target:  5'- aCCAGCaGUGgcGAGggGaCCagGAGg -3'
miRNA:   3'- gGGUCGaCACuuCUCuuCgGGaaUUC- -5'
28852 3' -50.3 NC_006146.1 + 158649 0.67 0.988555
Target:  5'- cCCCAGguucCUGUGAAGAGcAagaagcgugugucuAGCCCUcccaugauUGAGa -3'
miRNA:   3'- -GGGUC----GACACUUCUC-U--------------UCGGGA--------AUUC- -5'
28852 3' -50.3 NC_006146.1 + 157474 0.7 0.962466
Target:  5'- cUCCGGCUGgccuggGAcccGGGGAGGCaCCcUGAGg -3'
miRNA:   3'- -GGGUCGACa-----CU---UCUCUUCG-GGaAUUC- -5'
28852 3' -50.3 NC_006146.1 + 155570 0.67 0.994022
Target:  5'- cCCCAGguucCUGUGAAGAGcAagaagcguguguacuAGCCCUc--- -3'
miRNA:   3'- -GGGUC----GACACUUCUC-U---------------UCGGGAauuc -5'
28852 3' -50.3 NC_006146.1 + 154396 0.7 0.962466
Target:  5'- cUCCGGCUGgccuggGAcccGGGGAGGCaCCcUGAGg -3'
miRNA:   3'- -GGGUCGACa-----CU---UCUCUUCG-GGaAUUC- -5'
28852 3' -50.3 NC_006146.1 + 152492 0.67 0.994022
Target:  5'- cCCCAGguucCUGUGAAGAGcAagaagcguguguacuAGCCCUc--- -3'
miRNA:   3'- -GGGUC----GACACUUCUC-U---------------UCGGGAauuc -5'
28852 3' -50.3 NC_006146.1 + 151318 0.7 0.962466
Target:  5'- cUCCGGCUGgccuggGAcccGGGGAGGCaCCcUGAGg -3'
miRNA:   3'- -GGGUCGACa-----CU---UCUCUUCG-GGaAUUC- -5'
28852 3' -50.3 NC_006146.1 + 149414 0.67 0.994022
Target:  5'- cCCCAGguucCUGUGAAGAGcAagaagcguguguacuAGCCCUc--- -3'
miRNA:   3'- -GGGUC----GACACUUCUC-U---------------UCGGGAauuc -5'
28852 3' -50.3 NC_006146.1 + 148240 0.7 0.962466
Target:  5'- cUCCGGCUGgccuggGAcccGGGGAGGCaCCcUGAGg -3'
miRNA:   3'- -GGGUCGACa-----CU---UCUCUUCG-GGaAUUC- -5'
28852 3' -50.3 NC_006146.1 + 146336 0.67 0.994022
Target:  5'- cCCCAGguucCUGUGAAGAGcAagaagcguguguacuAGCCCUc--- -3'
miRNA:   3'- -GGGUC----GACACUUCUC-U---------------UCGGGAauuc -5'
28852 3' -50.3 NC_006146.1 + 145642 0.66 0.995306
Target:  5'- uCCUGGCUG-GAGacGGGcGAGCCaCUUAGGa -3'
miRNA:   3'- -GGGUCGACaCUU--CUC-UUCGG-GAAUUC- -5'
28852 3' -50.3 NC_006146.1 + 145264 0.68 0.979821
Target:  5'- aCCAGCgccGUGAucuuggagcugAGGGggGCCUcgUAGGu -3'
miRNA:   3'- gGGUCGa--CACU-----------UCUCuuCGGGa-AUUC- -5'
28852 3' -50.3 NC_006146.1 + 145162 0.7 0.962466
Target:  5'- cUCCGGCUGgccuggGAcccGGGGAGGCaCCcUGAGg -3'
miRNA:   3'- -GGGUCGACa-----CU---UCUCUUCG-GGaAUUC- -5'
28852 3' -50.3 NC_006146.1 + 144919 0.66 0.995988
Target:  5'- aCCCAGUggcagcuuuauUGUGAgaccauuuacAGAGu-GCCCUUGGa -3'
miRNA:   3'- -GGGUCG-----------ACACU----------UCUCuuCGGGAAUUc -5'
28852 3' -50.3 NC_006146.1 + 143258 0.67 0.994022
Target:  5'- cCCCAGguucCUGUGAAGAGcAagaagcguguguacuAGCCCUc--- -3'
miRNA:   3'- -GGGUC----GACACUUCUC-U---------------UCGGGAauuc -5'
28852 3' -50.3 NC_006146.1 + 142084 0.7 0.962466
Target:  5'- cUCCGGCUGgccuggGAcccGGGGAGGCaCCcUGAGg -3'
miRNA:   3'- -GGGUCGACa-----CU---UCUCUUCG-GGaAUUC- -5'
28852 3' -50.3 NC_006146.1 + 137990 0.7 0.95072
Target:  5'- gCCCGGCgggGUGggGGGugcGCCCc---- -3'
miRNA:   3'- -GGGUCGa--CACuuCUCuu-CGGGaauuc -5'
28852 3' -50.3 NC_006146.1 + 137688 0.67 0.991579
Target:  5'- aCCCGGCUGccccGGAGcaccAGGAGCaCCcgGAGg -3'
miRNA:   3'- -GGGUCGACa---CUUC----UCUUCG-GGaaUUC- -5'
28852 3' -50.3 NC_006146.1 + 133526 0.67 0.99366
Target:  5'- -aCAGuCUG-GAAGuGAGGCCCUUu-- -3'
miRNA:   3'- ggGUC-GACaCUUCuCUUCGGGAAuuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.