miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28852 3' -50.3 NC_006146.1 + 137688 0.67 0.991579
Target:  5'- aCCCGGCUGccccGGAGcaccAGGAGCaCCcgGAGg -3'
miRNA:   3'- -GGGUCGACa---CUUC----UCUUCG-GGaaUUC- -5'
28852 3' -50.3 NC_006146.1 + 115242 0.67 0.991579
Target:  5'- gCCCAGCU-----GAGAGGCCCa---- -3'
miRNA:   3'- -GGGUCGAcacuuCUCUUCGGGaauuc -5'
28852 3' -50.3 NC_006146.1 + 86300 0.67 0.991579
Target:  5'- gUCCGGCaUGgcUGGAGuaGGAGGCCCUg--- -3'
miRNA:   3'- -GGGUCG-AC--ACUUC--UCUUCGGGAauuc -5'
28852 3' -50.3 NC_006146.1 + 69958 0.67 0.991579
Target:  5'- gCCuGCUG-GAAGAGGAGCUUg---- -3'
miRNA:   3'- gGGuCGACaCUUCUCUUCGGGaauuc -5'
28852 3' -50.3 NC_006146.1 + 130951 0.67 0.990353
Target:  5'- cCCCAGCcGUGucaucagggucAGGAGgcGCCCa---- -3'
miRNA:   3'- -GGGUCGaCAC-----------UUCUCuuCGGGaauuc -5'
28852 3' -50.3 NC_006146.1 + 88833 0.67 0.988991
Target:  5'- uCCCAGCaccUGAAGc-AGGCCCUUGGu -3'
miRNA:   3'- -GGGUCGac-ACUUCucUUCGGGAAUUc -5'
28852 3' -50.3 NC_006146.1 + 111802 0.67 0.988991
Target:  5'- cCCUGGCaugGUGAcggagaggcgAGGGAGGCCCa---- -3'
miRNA:   3'- -GGGUCGa--CACU----------UCUCUUCGGGaauuc -5'
28852 3' -50.3 NC_006146.1 + 92243 0.67 0.988991
Target:  5'- gCCCGGcCUGUGGcugcugcugGGGGGcgGGCCCggccUGGGg -3'
miRNA:   3'- -GGGUC-GACACU---------UCUCU--UCGGGa---AUUC- -5'
28852 3' -50.3 NC_006146.1 + 158649 0.67 0.988555
Target:  5'- cCCCAGguucCUGUGAAGAGcAagaagcgugugucuAGCCCUcccaugauUGAGa -3'
miRNA:   3'- -GGGUC----GACACUUCUC-U--------------UCGGGA--------AUUC- -5'
28852 3' -50.3 NC_006146.1 + 123042 0.68 0.987484
Target:  5'- gCCCAgguccgggcGCUG-GAGGAGAGgGUCCUcGAGa -3'
miRNA:   3'- -GGGU---------CGACaCUUCUCUU-CGGGAaUUC- -5'
28852 3' -50.3 NC_006146.1 + 70544 0.68 0.987484
Target:  5'- gCCCGGCUGgcucgucuUGAGucuGAGAauaaGGCCCUgAAGc -3'
miRNA:   3'- -GGGUCGAC--------ACUU---CUCU----UCGGGAaUUC- -5'
28852 3' -50.3 NC_006146.1 + 90543 0.68 0.987484
Target:  5'- uCCCGGagcgGUGGAGcaGGGCCCggGAGa -3'
miRNA:   3'- -GGGUCga--CACUUCucUUCGGGaaUUC- -5'
28852 3' -50.3 NC_006146.1 + 166762 0.68 0.985823
Target:  5'- aCCAGCaGUGgcGAGggGaCCagGAGg -3'
miRNA:   3'- gGGUCGaCACuuCUCuuCgGGaaUUC- -5'
28852 3' -50.3 NC_006146.1 + 51828 0.68 0.982001
Target:  5'- cCCCggGGCggcGUGGAGGGggGCUCg---- -3'
miRNA:   3'- -GGG--UCGa--CACUUCUCuuCGGGaauuc -5'
28852 3' -50.3 NC_006146.1 + 43650 0.68 0.979821
Target:  5'- gCCGcCUGgGGAGAGggGCCCg---- -3'
miRNA:   3'- gGGUcGACaCUUCUCuuCGGGaauuc -5'
28852 3' -50.3 NC_006146.1 + 145264 0.68 0.979821
Target:  5'- aCCAGCgccGUGAucuuggagcugAGGGggGCCUcgUAGGu -3'
miRNA:   3'- gGGUCGa--CACU-----------UCUCuuCGGGa-AUUC- -5'
28852 3' -50.3 NC_006146.1 + 103633 0.69 0.977451
Target:  5'- --aAGCUGgcacgcgGAGGAGggGCCCg---- -3'
miRNA:   3'- gggUCGACa------CUUCUCuuCGGGaauuc -5'
28852 3' -50.3 NC_006146.1 + 117581 0.69 0.977451
Target:  5'- gCCGGCgUGUGGAGucGGggGUgacagagaaCCUUGAGg -3'
miRNA:   3'- gGGUCG-ACACUUC--UCuuCG---------GGAAUUC- -5'
28852 3' -50.3 NC_006146.1 + 124590 0.69 0.969117
Target:  5'- gCCCGGCcGagagGAAGAGggGCUCg---- -3'
miRNA:   3'- -GGGUCGaCa---CUUCUCuuCGGGaauuc -5'
28852 3' -50.3 NC_006146.1 + 101636 0.69 0.969117
Target:  5'- gCCAGCUGcaucuucGAGGAGGacccggaccuGGCCCUgggGGGa -3'
miRNA:   3'- gGGUCGACa------CUUCUCU----------UCGGGAa--UUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.