Results 41 - 48 of 48 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 28852 | 5' | -58.8 | NC_006146.1 | + | 123941 | 0.7 | 0.61473 |
|
Target: 5'- gUCCCCUCAGCUCCggcagguccuucgUCUUGCCa--- -3' miRNA: 3'- gAGGGGGGUCGAGGa------------GGAAUGGcacu -5' |
|||||||
| 28852 | 5' | -58.8 | NC_006146.1 | + | 52856 | 0.7 | 0.588887 |
|
Target: 5'- -gCCCUCCAGCUacgCCUCCUUugUGg-- -3' miRNA: 3'- gaGGGGGGUCGA---GGAGGAAugGCacu -5' |
|||||||
| 28852 | 5' | -58.8 | NC_006146.1 | + | 80854 | 0.7 | 0.578995 |
|
Target: 5'- gCUCCCUCCAGCaccaCCUCCUgcuccACCGc-- -3' miRNA: 3'- -GAGGGGGGUCGa---GGAGGAa----UGGCacu -5' |
|||||||
| 28852 | 5' | -58.8 | NC_006146.1 | + | 103662 | 0.7 | 0.569139 |
|
Target: 5'- aUCCCCCCAGcCUCCguggcuUCCUgugccugGCCGg-- -3' miRNA: 3'- gAGGGGGGUC-GAGG------AGGAa------UGGCacu -5' |
|||||||
| 28852 | 5' | -58.8 | NC_006146.1 | + | 47419 | 0.72 | 0.482973 |
|
Target: 5'- -gCCagCCUCAGCUCCUCCaUGCCGUc- -3' miRNA: 3'- gaGG--GGGGUCGAGGAGGaAUGGCAcu -5' |
|||||||
| 28852 | 5' | -58.8 | NC_006146.1 | + | 100191 | 0.72 | 0.473769 |
|
Target: 5'- -gCCCCCC-GCUCCUCCUgagcucCCGUu- -3' miRNA: 3'- gaGGGGGGuCGAGGAGGAau----GGCAcu -5' |
|||||||
| 28852 | 5' | -58.8 | NC_006146.1 | + | 96309 | 0.74 | 0.379017 |
|
Target: 5'- uUCCCCCCAGC-CaUCUUUGCCG-GAg -3' miRNA: 3'- gAGGGGGGUCGaGgAGGAAUGGCaCU- -5' |
|||||||
| 28852 | 5' | -58.8 | NC_006146.1 | + | 51918 | 1.09 | 0.001886 |
|
Target: 5'- cCUCCCCCCAGCUCCUCCUUACCGUGAg -3' miRNA: 3'- -GAGGGGGGUCGAGGAGGAAUGGCACU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home