miRNA display CGI


Results 21 - 40 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28852 5' -58.8 NC_006146.1 + 130028 0.67 0.783203
Target:  5'- ---gCCCCGGCUCCgucUCCggACCGcGAg -3'
miRNA:   3'- gaggGGGGUCGAGG---AGGaaUGGCaCU- -5'
28852 5' -58.8 NC_006146.1 + 111481 0.67 0.783203
Target:  5'- -aCCCCCCGgcauacuuGCUCCUCUUgaacCCGgGAa -3'
miRNA:   3'- gaGGGGGGU--------CGAGGAGGAau--GGCaCU- -5'
28852 5' -58.8 NC_006146.1 + 42466 0.67 0.780502
Target:  5'- cCUCCCgCCCGGuCUgcggcccggaucacCCUCCccugGCCGUGu -3'
miRNA:   3'- -GAGGG-GGGUC-GA--------------GGAGGaa--UGGCACu -5'
28852 5' -58.8 NC_006146.1 + 4774 0.67 0.774154
Target:  5'- cCUCCCCCUccguCUCCUCCcUGCCu--- -3'
miRNA:   3'- -GAGGGGGGuc--GAGGAGGaAUGGcacu -5'
28852 5' -58.8 NC_006146.1 + 81335 0.67 0.774154
Target:  5'- cCUCCgCCCCA-C-CCUCCaaauuCCGUGAa -3'
miRNA:   3'- -GAGG-GGGGUcGaGGAGGaau--GGCACU- -5'
28852 5' -58.8 NC_006146.1 + 80939 0.67 0.768666
Target:  5'- uUCCCUCCAGCaccaccggcacugcuUCCUCCagUGCCa--- -3'
miRNA:   3'- gAGGGGGGUCG---------------AGGAGGa-AUGGcacu -5'
28852 5' -58.8 NC_006146.1 + 82491 0.67 0.764984
Target:  5'- -aCCCCCCGGCaCaagCCauagGCCGUGGu -3'
miRNA:   3'- gaGGGGGGUCGaGga-GGaa--UGGCACU- -5'
28852 5' -58.8 NC_006146.1 + 33910 0.67 0.764061
Target:  5'- --aCCCCCguccuggAGCUCCUCCgu-CCGgUGGg -3'
miRNA:   3'- gagGGGGG-------UCGAGGAGGaauGGC-ACU- -5'
28852 5' -58.8 NC_006146.1 + 142983 0.67 0.755702
Target:  5'- uUCCgCCCUAGC-CCUUg--GCCGUGGg -3'
miRNA:   3'- gAGG-GGGGUCGaGGAGgaaUGGCACU- -5'
28852 5' -58.8 NC_006146.1 + 33723 0.67 0.754768
Target:  5'- --aCCCCCguucuggAGCUCCUCCgguCCGgUGGg -3'
miRNA:   3'- gagGGGGG-------UCGAGGAGGaauGGC-ACU- -5'
28852 5' -58.8 NC_006146.1 + 101657 0.67 0.746316
Target:  5'- -cUCCUCCAGCUCCUCCaggucAUCGUc- -3'
miRNA:   3'- gaGGGGGGUCGAGGAGGaa---UGGCAcu -5'
28852 5' -58.8 NC_006146.1 + 5105 0.67 0.746316
Target:  5'- -cCCCCCUAGCcggCCgugCC--ACCGUGGc -3'
miRNA:   3'- gaGGGGGGUCGa--GGa--GGaaUGGCACU- -5'
28852 5' -58.8 NC_006146.1 + 91736 0.68 0.736836
Target:  5'- uUCCUCCCAGUgCCUCCguucuCCGg-- -3'
miRNA:   3'- gAGGGGGGUCGaGGAGGaau--GGCacu -5'
28852 5' -58.8 NC_006146.1 + 115128 0.68 0.727269
Target:  5'- -gCCCCUguuguugcgcagCAGCUCCUCCUUGuuGa-- -3'
miRNA:   3'- gaGGGGG------------GUCGAGGAGGAAUggCacu -5'
28852 5' -58.8 NC_006146.1 + 123736 0.68 0.717623
Target:  5'- gCUCUCCCCAGUaugCCUCCUcagggacagGCuCGUGc -3'
miRNA:   3'- -GAGGGGGGUCGa--GGAGGAa--------UG-GCACu -5'
28852 5' -58.8 NC_006146.1 + 45854 0.68 0.698133
Target:  5'- gUCCCCCgAGCcCCUUUUgggACCGgUGAu -3'
miRNA:   3'- gAGGGGGgUCGaGGAGGAa--UGGC-ACU- -5'
28852 5' -58.8 NC_006146.1 + 55892 0.69 0.648631
Target:  5'- gCUCCCCgcuccaCCAGCUCCacggccauggCCUUgauguccgcgGCCGUGGg -3'
miRNA:   3'- -GAGGGG------GGUCGAGGa---------GGAA----------UGGCACU- -5'
28852 5' -58.8 NC_006146.1 + 80673 0.69 0.648631
Target:  5'- cCUCUCCCuCGGCUgCCUCCUccACCGc-- -3'
miRNA:   3'- -GAGGGGG-GUCGA-GGAGGAa-UGGCacu -5'
28852 5' -58.8 NC_006146.1 + 159732 0.69 0.62769
Target:  5'- uUCCCCCCGuagaggcGCUCCUugaaugCCU--CCGUGAc -3'
miRNA:   3'- gAGGGGGGU-------CGAGGA------GGAauGGCACU- -5'
28852 5' -58.8 NC_006146.1 + 123472 0.7 0.618716
Target:  5'- -gUgCCCCAGCUCCUCCauccuaACgGUGGu -3'
miRNA:   3'- gaGgGGGGUCGAGGAGGaa----UGgCACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.