miRNA display CGI


Results 21 - 40 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28852 5' -58.8 NC_006146.1 + 33910 0.67 0.764061
Target:  5'- --aCCCCCguccuggAGCUCCUCCgu-CCGgUGGg -3'
miRNA:   3'- gagGGGGG-------UCGAGGAGGaauGGC-ACU- -5'
28852 5' -58.8 NC_006146.1 + 82491 0.67 0.764984
Target:  5'- -aCCCCCCGGCaCaagCCauagGCCGUGGu -3'
miRNA:   3'- gaGGGGGGUCGaGga-GGaa--UGGCACU- -5'
28852 5' -58.8 NC_006146.1 + 80939 0.67 0.768666
Target:  5'- uUCCCUCCAGCaccaccggcacugcuUCCUCCagUGCCa--- -3'
miRNA:   3'- gAGGGGGGUCG---------------AGGAGGa-AUGGcacu -5'
28852 5' -58.8 NC_006146.1 + 81335 0.67 0.774154
Target:  5'- cCUCCgCCCCA-C-CCUCCaaauuCCGUGAa -3'
miRNA:   3'- -GAGG-GGGGUcGaGGAGGaau--GGCACU- -5'
28852 5' -58.8 NC_006146.1 + 4774 0.67 0.774154
Target:  5'- cCUCCCCCUccguCUCCUCCcUGCCu--- -3'
miRNA:   3'- -GAGGGGGGuc--GAGGAGGaAUGGcacu -5'
28852 5' -58.8 NC_006146.1 + 42466 0.67 0.780502
Target:  5'- cCUCCCgCCCGGuCUgcggcccggaucacCCUCCccugGCCGUGu -3'
miRNA:   3'- -GAGGG-GGGUC-GA--------------GGAGGaa--UGGCACu -5'
28852 5' -58.8 NC_006146.1 + 130028 0.67 0.783203
Target:  5'- ---gCCCCGGCUCCgucUCCggACCGcGAg -3'
miRNA:   3'- gaggGGGGUCGAGG---AGGaaUGGCaCU- -5'
28852 5' -58.8 NC_006146.1 + 32798 0.67 0.783203
Target:  5'- aUCCCCgCAGCaCCUCCUUgGCUGc-- -3'
miRNA:   3'- gAGGGGgGUCGaGGAGGAA-UGGCacu -5'
28852 5' -58.8 NC_006146.1 + 119326 0.67 0.783203
Target:  5'- gCUCCCCCgGGCcCCUCCcgGCgGc-- -3'
miRNA:   3'- -GAGGGGGgUCGaGGAGGaaUGgCacu -5'
28852 5' -58.8 NC_006146.1 + 111481 0.67 0.783203
Target:  5'- -aCCCCCCGgcauacuuGCUCCUCUUgaacCCGgGAa -3'
miRNA:   3'- gaGGGGGGU--------CGAGGAGGAau--GGCaCU- -5'
28852 5' -58.8 NC_006146.1 + 4223 0.67 0.795654
Target:  5'- uCUCCCCCCugccaggccacaccGCUCCcCCUUcCCGg-- -3'
miRNA:   3'- -GAGGGGGGu-------------CGAGGaGGAAuGGCacu -5'
28852 5' -58.8 NC_006146.1 + 144756 0.66 0.800907
Target:  5'- -gCCCCCguGCUCUUUCcgACCGg-- -3'
miRNA:   3'- gaGGGGGguCGAGGAGGaaUGGCacu -5'
28852 5' -58.8 NC_006146.1 + 113883 0.66 0.800907
Target:  5'- aCUCCaCCgCCAcCUCCUCCUcgGCCaUGGc -3'
miRNA:   3'- -GAGG-GG-GGUcGAGGAGGAa-UGGcACU- -5'
28852 5' -58.8 NC_006146.1 + 40955 0.66 0.800907
Target:  5'- -cCCaCCCCAGgUCCgugCCguagaccGCCGUGGu -3'
miRNA:   3'- gaGG-GGGGUCgAGGa--GGaa-----UGGCACU- -5'
28852 5' -58.8 NC_006146.1 + 115319 0.66 0.818032
Target:  5'- -gCCCCUCGGCggCCUCCUgGuuGUa- -3'
miRNA:   3'- gaGGGGGGUCGa-GGAGGAaUggCAcu -5'
28852 5' -58.8 NC_006146.1 + 26122 0.66 0.826357
Target:  5'- -cCCCCUCAGCUugUCUCCccACCGg-- -3'
miRNA:   3'- gaGGGGGGUCGA--GGAGGaaUGGCacu -5'
28852 5' -58.8 NC_006146.1 + 23044 0.66 0.826357
Target:  5'- -cCCCCUCAGCUugUCUCCccACCGg-- -3'
miRNA:   3'- gaGGGGGGUCGA--GGAGGaaUGGCacu -5'
28852 5' -58.8 NC_006146.1 + 13811 0.66 0.826357
Target:  5'- -cCCCCUCAGCUugUCUCCccACCGg-- -3'
miRNA:   3'- gaGGGGGGUCGA--GGAGGaaUGGCacu -5'
28852 5' -58.8 NC_006146.1 + 16889 0.66 0.826357
Target:  5'- -cCCCCUCAGCUugUCUCCccACCGg-- -3'
miRNA:   3'- gaGGGGGGUCGA--GGAGGaaUGGCacu -5'
28852 5' -58.8 NC_006146.1 + 19966 0.66 0.826357
Target:  5'- -cCCCCUCAGCUugUCUCCccACCGg-- -3'
miRNA:   3'- gaGGGGGGUCGA--GGAGGaaUGGCacu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.