Results 21 - 40 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28852 | 5' | -58.8 | NC_006146.1 | + | 67771 | 0.66 | 0.826357 |
Target: 5'- -cUCCCCCAGCUCggCCagggaCGUGAc -3' miRNA: 3'- gaGGGGGGUCGAGgaGGaaug-GCACU- -5' |
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28852 | 5' | -58.8 | NC_006146.1 | + | 80673 | 0.69 | 0.648631 |
Target: 5'- cCUCUCCCuCGGCUgCCUCCUccACCGc-- -3' miRNA: 3'- -GAGGGGG-GUCGA-GGAGGAa-UGGCacu -5' |
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28852 | 5' | -58.8 | NC_006146.1 | + | 80854 | 0.7 | 0.578995 |
Target: 5'- gCUCCCUCCAGCaccaCCUCCUgcuccACCGc-- -3' miRNA: 3'- -GAGGGGGGUCGa---GGAGGAa----UGGCacu -5' |
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28852 | 5' | -58.8 | NC_006146.1 | + | 80939 | 0.67 | 0.768666 |
Target: 5'- uUCCCUCCAGCaccaccggcacugcuUCCUCCagUGCCa--- -3' miRNA: 3'- gAGGGGGGUCG---------------AGGAGGa-AUGGcacu -5' |
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28852 | 5' | -58.8 | NC_006146.1 | + | 81335 | 0.67 | 0.774154 |
Target: 5'- cCUCCgCCCCA-C-CCUCCaaauuCCGUGAa -3' miRNA: 3'- -GAGG-GGGGUcGaGGAGGaau--GGCACU- -5' |
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28852 | 5' | -58.8 | NC_006146.1 | + | 82491 | 0.67 | 0.764984 |
Target: 5'- -aCCCCCCGGCaCaagCCauagGCCGUGGu -3' miRNA: 3'- gaGGGGGGUCGaGga-GGaa--UGGCACU- -5' |
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28852 | 5' | -58.8 | NC_006146.1 | + | 85909 | 0.66 | 0.834515 |
Target: 5'- cCUCUcgcgauggaCCCCAGCUugCCUCCUgaagaUGUGAa -3' miRNA: 3'- -GAGG---------GGGGUCGA--GGAGGAaug--GCACU- -5' |
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28852 | 5' | -58.8 | NC_006146.1 | + | 91736 | 0.68 | 0.736836 |
Target: 5'- uUCCUCCCAGUgCCUCCguucuCCGg-- -3' miRNA: 3'- gAGGGGGGUCGaGGAGGaau--GGCacu -5' |
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28852 | 5' | -58.8 | NC_006146.1 | + | 96309 | 0.74 | 0.379017 |
Target: 5'- uUCCCCCCAGC-CaUCUUUGCCG-GAg -3' miRNA: 3'- gAGGGGGGUCGaGgAGGAAUGGCaCU- -5' |
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28852 | 5' | -58.8 | NC_006146.1 | + | 100191 | 0.72 | 0.473769 |
Target: 5'- -gCCCCCC-GCUCCUCCUgagcucCCGUu- -3' miRNA: 3'- gaGGGGGGuCGAGGAGGAau----GGCAcu -5' |
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28852 | 5' | -58.8 | NC_006146.1 | + | 101657 | 0.67 | 0.746316 |
Target: 5'- -cUCCUCCAGCUCCUCCaggucAUCGUc- -3' miRNA: 3'- gaGGGGGGUCGAGGAGGaa---UGGCAcu -5' |
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28852 | 5' | -58.8 | NC_006146.1 | + | 102283 | 0.66 | 0.826357 |
Target: 5'- uCUCCCCgCCAGC-CCUCCcuuCCu--- -3' miRNA: 3'- -GAGGGG-GGUCGaGGAGGaauGGcacu -5' |
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28852 | 5' | -58.8 | NC_006146.1 | + | 103662 | 0.7 | 0.569139 |
Target: 5'- aUCCCCCCAGcCUCCguggcuUCCUgugccugGCCGg-- -3' miRNA: 3'- gAGGGGGGUC-GAGG------AGGAa------UGGCacu -5' |
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28852 | 5' | -58.8 | NC_006146.1 | + | 111481 | 0.67 | 0.783203 |
Target: 5'- -aCCCCCCGgcauacuuGCUCCUCUUgaacCCGgGAa -3' miRNA: 3'- gaGGGGGGU--------CGAGGAGGAau--GGCaCU- -5' |
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28852 | 5' | -58.8 | NC_006146.1 | + | 113883 | 0.66 | 0.800907 |
Target: 5'- aCUCCaCCgCCAcCUCCUCCUcgGCCaUGGc -3' miRNA: 3'- -GAGG-GG-GGUcGAGGAGGAa-UGGcACU- -5' |
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28852 | 5' | -58.8 | NC_006146.1 | + | 115128 | 0.68 | 0.727269 |
Target: 5'- -gCCCCUguuguugcgcagCAGCUCCUCCUUGuuGa-- -3' miRNA: 3'- gaGGGGG------------GUCGAGGAGGAAUggCacu -5' |
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28852 | 5' | -58.8 | NC_006146.1 | + | 115319 | 0.66 | 0.818032 |
Target: 5'- -gCCCCUCGGCggCCUCCUgGuuGUa- -3' miRNA: 3'- gaGGGGGGUCGa-GGAGGAaUggCAcu -5' |
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28852 | 5' | -58.8 | NC_006146.1 | + | 119326 | 0.67 | 0.783203 |
Target: 5'- gCUCCCCCgGGCcCCUCCcgGCgGc-- -3' miRNA: 3'- -GAGGGGGgUCGaGGAGGaaUGgCacu -5' |
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28852 | 5' | -58.8 | NC_006146.1 | + | 123472 | 0.7 | 0.618716 |
Target: 5'- -gUgCCCCAGCUCCUCCauccuaACgGUGGu -3' miRNA: 3'- gaGgGGGGUCGAGGAGGaa----UGgCACU- -5' |
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28852 | 5' | -58.8 | NC_006146.1 | + | 123736 | 0.68 | 0.717623 |
Target: 5'- gCUCUCCCCAGUaugCCUCCUcagggacagGCuCGUGc -3' miRNA: 3'- -GAGGGGGGUCGa--GGAGGAa--------UG-GCACu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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