miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28852 5' -58.8 NC_006146.1 + 4223 0.67 0.795654
Target:  5'- uCUCCCCCCugccaggccacaccGCUCCcCCUUcCCGg-- -3'
miRNA:   3'- -GAGGGGGGu-------------CGAGGaGGAAuGGCacu -5'
28852 5' -58.8 NC_006146.1 + 4774 0.67 0.774154
Target:  5'- cCUCCCCCUccguCUCCUCCcUGCCu--- -3'
miRNA:   3'- -GAGGGGGGuc--GAGGAGGaAUGGcacu -5'
28852 5' -58.8 NC_006146.1 + 5105 0.67 0.746316
Target:  5'- -cCCCCCUAGCcggCCgugCC--ACCGUGGc -3'
miRNA:   3'- gaGGGGGGUCGa--GGa--GGaaUGGCACU- -5'
28852 5' -58.8 NC_006146.1 + 13811 0.66 0.826357
Target:  5'- -cCCCCUCAGCUugUCUCCccACCGg-- -3'
miRNA:   3'- gaGGGGGGUCGA--GGAGGaaUGGCacu -5'
28852 5' -58.8 NC_006146.1 + 16889 0.66 0.826357
Target:  5'- -cCCCCUCAGCUugUCUCCccACCGg-- -3'
miRNA:   3'- gaGGGGGGUCGA--GGAGGaaUGGCacu -5'
28852 5' -58.8 NC_006146.1 + 19966 0.66 0.826357
Target:  5'- -cCCCCUCAGCUugUCUCCccACCGg-- -3'
miRNA:   3'- gaGGGGGGUCGA--GGAGGaaUGGCacu -5'
28852 5' -58.8 NC_006146.1 + 23044 0.66 0.826357
Target:  5'- -cCCCCUCAGCUugUCUCCccACCGg-- -3'
miRNA:   3'- gaGGGGGGUCGA--GGAGGaaUGGCacu -5'
28852 5' -58.8 NC_006146.1 + 26122 0.66 0.826357
Target:  5'- -cCCCCUCAGCUugUCUCCccACCGg-- -3'
miRNA:   3'- gaGGGGGGUCGA--GGAGGaaUGGCacu -5'
28852 5' -58.8 NC_006146.1 + 29200 0.66 0.826357
Target:  5'- -cCCCCUCAGCUugUCUCCccACCGg-- -3'
miRNA:   3'- gaGGGGGGUCGA--GGAGGaaUGGCacu -5'
28852 5' -58.8 NC_006146.1 + 32798 0.67 0.783203
Target:  5'- aUCCCCgCAGCaCCUCCUUgGCUGc-- -3'
miRNA:   3'- gAGGGGgGUCGaGGAGGAA-UGGCacu -5'
28852 5' -58.8 NC_006146.1 + 33723 0.67 0.754768
Target:  5'- --aCCCCCguucuggAGCUCCUCCgguCCGgUGGg -3'
miRNA:   3'- gagGGGGG-------UCGAGGAGGaauGGC-ACU- -5'
28852 5' -58.8 NC_006146.1 + 33910 0.67 0.764061
Target:  5'- --aCCCCCguccuggAGCUCCUCCgu-CCGgUGGg -3'
miRNA:   3'- gagGGGGG-------UCGAGGAGGaauGGC-ACU- -5'
28852 5' -58.8 NC_006146.1 + 40955 0.66 0.800907
Target:  5'- -cCCaCCCCAGgUCCgugCCguagaccGCCGUGGu -3'
miRNA:   3'- gaGG-GGGGUCgAGGa--GGaa-----UGGCACU- -5'
28852 5' -58.8 NC_006146.1 + 42466 0.67 0.780502
Target:  5'- cCUCCCgCCCGGuCUgcggcccggaucacCCUCCccugGCCGUGu -3'
miRNA:   3'- -GAGGG-GGGUC-GA--------------GGAGGaa--UGGCACu -5'
28852 5' -58.8 NC_006146.1 + 45854 0.68 0.698133
Target:  5'- gUCCCCCgAGCcCCUUUUgggACCGgUGAu -3'
miRNA:   3'- gAGGGGGgUCGaGGAGGAa--UGGC-ACU- -5'
28852 5' -58.8 NC_006146.1 + 47419 0.72 0.482973
Target:  5'- -gCCagCCUCAGCUCCUCCaUGCCGUc- -3'
miRNA:   3'- gaGG--GGGGUCGAGGAGGaAUGGCAcu -5'
28852 5' -58.8 NC_006146.1 + 51918 1.09 0.001886
Target:  5'- cCUCCCCCCAGCUCCUCCUUACCGUGAg -3'
miRNA:   3'- -GAGGGGGGUCGAGGAGGAAUGGCACU- -5'
28852 5' -58.8 NC_006146.1 + 52856 0.7 0.588887
Target:  5'- -gCCCUCCAGCUacgCCUCCUUugUGg-- -3'
miRNA:   3'- gaGGGGGGUCGA---GGAGGAAugGCacu -5'
28852 5' -58.8 NC_006146.1 + 53995 0.66 0.834515
Target:  5'- -aUCCCCCGGCUuucCCUCaggGCCGg-- -3'
miRNA:   3'- gaGGGGGGUCGA---GGAGgaaUGGCacu -5'
28852 5' -58.8 NC_006146.1 + 55892 0.69 0.648631
Target:  5'- gCUCCCCgcuccaCCAGCUCCacggccauggCCUUgauguccgcgGCCGUGGg -3'
miRNA:   3'- -GAGGGG------GGUCGAGGa---------GGAA----------UGGCACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.