miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28852 5' -58.8 NC_006146.1 + 159732 0.69 0.62769
Target:  5'- uUCCCCCCGuagaggcGCUCCUugaaugCCU--CCGUGAc -3'
miRNA:   3'- gAGGGGGGU-------CGAGGA------GGAauGGCACU- -5'
28852 5' -58.8 NC_006146.1 + 32798 0.67 0.783203
Target:  5'- aUCCCCgCAGCaCCUCCUUgGCUGc-- -3'
miRNA:   3'- gAGGGGgGUCGaGGAGGAA-UGGCacu -5'
28852 5' -58.8 NC_006146.1 + 113883 0.66 0.800907
Target:  5'- aCUCCaCCgCCAcCUCCUCCUcgGCCaUGGc -3'
miRNA:   3'- -GAGG-GG-GGUcGAGGAGGAa-UGGcACU- -5'
28852 5' -58.8 NC_006146.1 + 138723 0.65 0.841707
Target:  5'- cCUCCCCCCc-CUaccccccCCUCCUUACgGUu- -3'
miRNA:   3'- -GAGGGGGGucGA-------GGAGGAAUGgCAcu -5'
28852 5' -58.8 NC_006146.1 + 5105 0.67 0.746316
Target:  5'- -cCCCCCUAGCcggCCgugCC--ACCGUGGc -3'
miRNA:   3'- gaGGGGGGUCGa--GGa--GGaaUGGCACU- -5'
28852 5' -58.8 NC_006146.1 + 96309 0.74 0.379017
Target:  5'- uUCCCCCCAGC-CaUCUUUGCCG-GAg -3'
miRNA:   3'- gAGGGGGGUCGaGgAGGAAUGGCaCU- -5'
28852 5' -58.8 NC_006146.1 + 100191 0.72 0.473769
Target:  5'- -gCCCCCC-GCUCCUCCUgagcucCCGUu- -3'
miRNA:   3'- gaGGGGGGuCGAGGAGGAau----GGCAcu -5'
28852 5' -58.8 NC_006146.1 + 47419 0.72 0.482973
Target:  5'- -gCCagCCUCAGCUCCUCCaUGCCGUc- -3'
miRNA:   3'- gaGG--GGGGUCGAGGAGGaAUGGCAcu -5'
28852 5' -58.8 NC_006146.1 + 123941 0.7 0.61473
Target:  5'- gUCCCCUCAGCUCCggcagguccuucgUCUUGCCa--- -3'
miRNA:   3'- gAGGGGGGUCGAGGa------------GGAAUGGcacu -5'
28852 5' -58.8 NC_006146.1 + 119326 0.67 0.783203
Target:  5'- gCUCCCCCgGGCcCCUCCcgGCgGc-- -3'
miRNA:   3'- -GAGGGGGgUCGaGGAGGaaUGgCacu -5'
28852 5' -58.8 NC_006146.1 + 33910 0.67 0.764061
Target:  5'- --aCCCCCguccuggAGCUCCUCCgu-CCGgUGGg -3'
miRNA:   3'- gagGGGGG-------UCGAGGAGGaauGGC-ACU- -5'
28852 5' -58.8 NC_006146.1 + 142983 0.67 0.755702
Target:  5'- uUCCgCCCUAGC-CCUUg--GCCGUGGg -3'
miRNA:   3'- gAGG-GGGGUCGaGGAGgaaUGGCACU- -5'
28852 5' -58.8 NC_006146.1 + 55892 0.69 0.648631
Target:  5'- gCUCCCCgcuccaCCAGCUCCacggccauggCCUUgauguccgcgGCCGUGGg -3'
miRNA:   3'- -GAGGGG------GGUCGAGGa---------GGAA----------UGGCACU- -5'
28852 5' -58.8 NC_006146.1 + 81335 0.67 0.774154
Target:  5'- cCUCCgCCCCA-C-CCUCCaaauuCCGUGAa -3'
miRNA:   3'- -GAGG-GGGGUcGaGGAGGaau--GGCACU- -5'
28852 5' -58.8 NC_006146.1 + 45854 0.68 0.698133
Target:  5'- gUCCCCCgAGCcCCUUUUgggACCGgUGAu -3'
miRNA:   3'- gAGGGGGgUCGaGGAGGAa--UGGC-ACU- -5'
28852 5' -58.8 NC_006146.1 + 33723 0.67 0.754768
Target:  5'- --aCCCCCguucuggAGCUCCUCCgguCCGgUGGg -3'
miRNA:   3'- gagGGGGG-------UCGAGGAGGaauGGC-ACU- -5'
28852 5' -58.8 NC_006146.1 + 42466 0.67 0.780502
Target:  5'- cCUCCCgCCCGGuCUgcggcccggaucacCCUCCccugGCCGUGu -3'
miRNA:   3'- -GAGGG-GGGUC-GA--------------GGAGGaa--UGGCACu -5'
28852 5' -58.8 NC_006146.1 + 130028 0.67 0.783203
Target:  5'- ---gCCCCGGCUCCgucUCCggACCGcGAg -3'
miRNA:   3'- gaggGGGGUCGAGG---AGGaaUGGCaCU- -5'
28852 5' -58.8 NC_006146.1 + 115128 0.68 0.727269
Target:  5'- -gCCCCUguuguugcgcagCAGCUCCUCCUUGuuGa-- -3'
miRNA:   3'- gaGGGGG------------GUCGAGGAGGAAUggCacu -5'
28852 5' -58.8 NC_006146.1 + 101657 0.67 0.746316
Target:  5'- -cUCCUCCAGCUCCUCCaggucAUCGUc- -3'
miRNA:   3'- gaGGGGGGUCGAGGAGGaa---UGGCAcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.