miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28852 5' -58.8 NC_006146.1 + 124676 0.65 0.841707
Target:  5'- cCUCCCUCCGGCuucauuuUCCUCCaggaaGCC-UGGg -3'
miRNA:   3'- -GAGGGGGGUCG-------AGGAGGaa---UGGcACU- -5'
28852 5' -58.8 NC_006146.1 + 51918 1.09 0.001886
Target:  5'- cCUCCCCCCAGCUCCUCCUUACCGUGAg -3'
miRNA:   3'- -GAGGGGGGUCGAGGAGGAAUGGCACU- -5'
28852 5' -58.8 NC_006146.1 + 103662 0.7 0.569139
Target:  5'- aUCCCCCCAGcCUCCguggcuUCCUgugccugGCCGg-- -3'
miRNA:   3'- gAGGGGGGUC-GAGG------AGGAa------UGGCacu -5'
28852 5' -58.8 NC_006146.1 + 80854 0.7 0.578995
Target:  5'- gCUCCCUCCAGCaccaCCUCCUgcuccACCGc-- -3'
miRNA:   3'- -GAGGGGGGUCGa---GGAGGAa----UGGCacu -5'
28852 5' -58.8 NC_006146.1 + 52856 0.7 0.588887
Target:  5'- -gCCCUCCAGCUacgCCUCCUUugUGg-- -3'
miRNA:   3'- gaGGGGGGUCGA---GGAGGAAugGCacu -5'
28852 5' -58.8 NC_006146.1 + 80673 0.69 0.648631
Target:  5'- cCUCUCCCuCGGCUgCCUCCUccACCGc-- -3'
miRNA:   3'- -GAGGGGG-GUCGA-GGAGGAa-UGGCacu -5'
28852 5' -58.8 NC_006146.1 + 123736 0.68 0.717623
Target:  5'- gCUCUCCCCAGUaugCCUCCUcagggacagGCuCGUGc -3'
miRNA:   3'- -GAGGGGGGUCGa--GGAGGAa--------UG-GCACu -5'
28852 5' -58.8 NC_006146.1 + 91736 0.68 0.736836
Target:  5'- uUCCUCCCAGUgCCUCCguucuCCGg-- -3'
miRNA:   3'- gAGGGGGGUCGaGGAGGaau--GGCacu -5'
28852 5' -58.8 NC_006146.1 + 82491 0.67 0.764984
Target:  5'- -aCCCCCCGGCaCaagCCauagGCCGUGGu -3'
miRNA:   3'- gaGGGGGGUCGaGga-GGaa--UGGCACU- -5'
28852 5' -58.8 NC_006146.1 + 80939 0.67 0.768666
Target:  5'- uUCCCUCCAGCaccaccggcacugcuUCCUCCagUGCCa--- -3'
miRNA:   3'- gAGGGGGGUCG---------------AGGAGGa-AUGGcacu -5'
28852 5' -58.8 NC_006146.1 + 85909 0.66 0.834515
Target:  5'- cCUCUcgcgauggaCCCCAGCUugCCUCCUgaagaUGUGAa -3'
miRNA:   3'- -GAGG---------GGGGUCGA--GGAGGAaug--GCACU- -5'
28852 5' -58.8 NC_006146.1 + 132987 0.66 0.834515
Target:  5'- gUCCCUgcuuagCAGCUCCcCCagcGCCGUGAa -3'
miRNA:   3'- gAGGGGg-----GUCGAGGaGGaa-UGGCACU- -5'
28852 5' -58.8 NC_006146.1 + 40955 0.66 0.800907
Target:  5'- -cCCaCCCCAGgUCCgugCCguagaccGCCGUGGu -3'
miRNA:   3'- gaGG-GGGGUCgAGGa--GGaa-----UGGCACU- -5'
28852 5' -58.8 NC_006146.1 + 4223 0.67 0.795654
Target:  5'- uCUCCCCCCugccaggccacaccGCUCCcCCUUcCCGg-- -3'
miRNA:   3'- -GAGGGGGGu-------------CGAGGaGGAAuGGCacu -5'
28852 5' -58.8 NC_006146.1 + 111481 0.67 0.783203
Target:  5'- -aCCCCCCGgcauacuuGCUCCUCUUgaacCCGgGAa -3'
miRNA:   3'- gaGGGGGGU--------CGAGGAGGAau--GGCaCU- -5'
28852 5' -58.8 NC_006146.1 + 4774 0.67 0.774154
Target:  5'- cCUCCCCCUccguCUCCUCCcUGCCu--- -3'
miRNA:   3'- -GAGGGGGGuc--GAGGAGGaAUGGcacu -5'
28852 5' -58.8 NC_006146.1 + 138723 0.65 0.841707
Target:  5'- cCUCCCCCCc-CUaccccccCCUCCUUACgGUu- -3'
miRNA:   3'- -GAGGGGGGucGA-------GGAGGAAUGgCAcu -5'
28852 5' -58.8 NC_006146.1 + 100191 0.72 0.473769
Target:  5'- -gCCCCCC-GCUCCUCCUgagcucCCGUu- -3'
miRNA:   3'- gaGGGGGGuCGAGGAGGAau----GGCAcu -5'
28852 5' -58.8 NC_006146.1 + 47419 0.72 0.482973
Target:  5'- -gCCagCCUCAGCUCCUCCaUGCCGUc- -3'
miRNA:   3'- gaGG--GGGGUCGAGGAGGaAUGGCAcu -5'
28852 5' -58.8 NC_006146.1 + 123941 0.7 0.61473
Target:  5'- gUCCCCUCAGCUCCggcagguccuucgUCUUGCCa--- -3'
miRNA:   3'- gAGGGGGGUCGAGGa------------GGAAUGGcacu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.