miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28852 5' -58.8 NC_006146.1 + 159732 0.69 0.62769
Target:  5'- uUCCCCCCGuagaggcGCUCCUugaaugCCU--CCGUGAc -3'
miRNA:   3'- gAGGGGGGU-------CGAGGA------GGAauGGCACU- -5'
28852 5' -58.8 NC_006146.1 + 144756 0.66 0.800907
Target:  5'- -gCCCCCguGCUCUUUCcgACCGg-- -3'
miRNA:   3'- gaGGGGGguCGAGGAGGaaUGGCacu -5'
28852 5' -58.8 NC_006146.1 + 142983 0.67 0.755702
Target:  5'- uUCCgCCCUAGC-CCUUg--GCCGUGGg -3'
miRNA:   3'- gAGG-GGGGUCGaGGAGgaaUGGCACU- -5'
28852 5' -58.8 NC_006146.1 + 138723 0.65 0.841707
Target:  5'- cCUCCCCCCc-CUaccccccCCUCCUUACgGUu- -3'
miRNA:   3'- -GAGGGGGGucGA-------GGAGGAAUGgCAcu -5'
28852 5' -58.8 NC_006146.1 + 132987 0.66 0.834515
Target:  5'- gUCCCUgcuuagCAGCUCCcCCagcGCCGUGAa -3'
miRNA:   3'- gAGGGGg-----GUCGAGGaGGaa-UGGCACU- -5'
28852 5' -58.8 NC_006146.1 + 130028 0.67 0.783203
Target:  5'- ---gCCCCGGCUCCgucUCCggACCGcGAg -3'
miRNA:   3'- gaggGGGGUCGAGG---AGGaaUGGCaCU- -5'
28852 5' -58.8 NC_006146.1 + 124676 0.65 0.841707
Target:  5'- cCUCCCUCCGGCuucauuuUCCUCCaggaaGCC-UGGg -3'
miRNA:   3'- -GAGGGGGGUCG-------AGGAGGaa---UGGcACU- -5'
28852 5' -58.8 NC_006146.1 + 123941 0.7 0.61473
Target:  5'- gUCCCCUCAGCUCCggcagguccuucgUCUUGCCa--- -3'
miRNA:   3'- gAGGGGGGUCGAGGa------------GGAAUGGcacu -5'
28852 5' -58.8 NC_006146.1 + 123736 0.68 0.717623
Target:  5'- gCUCUCCCCAGUaugCCUCCUcagggacagGCuCGUGc -3'
miRNA:   3'- -GAGGGGGGUCGa--GGAGGAa--------UG-GCACu -5'
28852 5' -58.8 NC_006146.1 + 123472 0.7 0.618716
Target:  5'- -gUgCCCCAGCUCCUCCauccuaACgGUGGu -3'
miRNA:   3'- gaGgGGGGUCGAGGAGGaa----UGgCACU- -5'
28852 5' -58.8 NC_006146.1 + 119326 0.67 0.783203
Target:  5'- gCUCCCCCgGGCcCCUCCcgGCgGc-- -3'
miRNA:   3'- -GAGGGGGgUCGaGGAGGaaUGgCacu -5'
28852 5' -58.8 NC_006146.1 + 115319 0.66 0.818032
Target:  5'- -gCCCCUCGGCggCCUCCUgGuuGUa- -3'
miRNA:   3'- gaGGGGGGUCGa-GGAGGAaUggCAcu -5'
28852 5' -58.8 NC_006146.1 + 115128 0.68 0.727269
Target:  5'- -gCCCCUguuguugcgcagCAGCUCCUCCUUGuuGa-- -3'
miRNA:   3'- gaGGGGG------------GUCGAGGAGGAAUggCacu -5'
28852 5' -58.8 NC_006146.1 + 113883 0.66 0.800907
Target:  5'- aCUCCaCCgCCAcCUCCUCCUcgGCCaUGGc -3'
miRNA:   3'- -GAGG-GG-GGUcGAGGAGGAa-UGGcACU- -5'
28852 5' -58.8 NC_006146.1 + 111481 0.67 0.783203
Target:  5'- -aCCCCCCGgcauacuuGCUCCUCUUgaacCCGgGAa -3'
miRNA:   3'- gaGGGGGGU--------CGAGGAGGAau--GGCaCU- -5'
28852 5' -58.8 NC_006146.1 + 103662 0.7 0.569139
Target:  5'- aUCCCCCCAGcCUCCguggcuUCCUgugccugGCCGg-- -3'
miRNA:   3'- gAGGGGGGUC-GAGG------AGGAa------UGGCacu -5'
28852 5' -58.8 NC_006146.1 + 102283 0.66 0.826357
Target:  5'- uCUCCCCgCCAGC-CCUCCcuuCCu--- -3'
miRNA:   3'- -GAGGGG-GGUCGaGGAGGaauGGcacu -5'
28852 5' -58.8 NC_006146.1 + 101657 0.67 0.746316
Target:  5'- -cUCCUCCAGCUCCUCCaggucAUCGUc- -3'
miRNA:   3'- gaGGGGGGUCGAGGAGGaa---UGGCAcu -5'
28852 5' -58.8 NC_006146.1 + 100191 0.72 0.473769
Target:  5'- -gCCCCCC-GCUCCUCCUgagcucCCGUu- -3'
miRNA:   3'- gaGGGGGGuCGAGGAGGAau----GGCAcu -5'
28852 5' -58.8 NC_006146.1 + 96309 0.74 0.379017
Target:  5'- uUCCCCCCAGC-CaUCUUUGCCG-GAg -3'
miRNA:   3'- gAGGGGGGUCGaGgAGGAAUGGCaCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.