miRNA display CGI


Results 21 - 40 of 166 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28853 5' -53.8 NC_006146.1 + 33406 0.68 0.903125
Target:  5'- gGGUGGCccGCCuGGGCAccgcugcGCCGCCGCu -3'
miRNA:   3'- -CUAUUG--CGG-CUCGUuuu----CGGCGGCGu -5'
28853 5' -53.8 NC_006146.1 + 34216 0.76 0.487796
Target:  5'- ---cGCGCCGcccgcuucaugggGGgGGAGGCCGCCGCAa -3'
miRNA:   3'- cuauUGCGGC-------------UCgUUUUCGGCGGCGU- -5'
28853 5' -53.8 NC_006146.1 + 39701 0.66 0.950409
Target:  5'- --cAGCGCCGcuccggaGGCAGAGGCCuGCaccaGCu -3'
miRNA:   3'- cuaUUGCGGC-------UCGUUUUCGG-CGg---CGu -5'
28853 5' -53.8 NC_006146.1 + 40158 0.66 0.958751
Target:  5'- --cGGCGucuucuCCGGGgAAGAGcCCGCCGCc -3'
miRNA:   3'- cuaUUGC------GGCUCgUUUUC-GGCGGCGu -5'
28853 5' -53.8 NC_006146.1 + 40599 0.67 0.926796
Target:  5'- --gGGCgGCCGAaccuccGCAu--GCCGCCGCu -3'
miRNA:   3'- cuaUUG-CGGCU------CGUuuuCGGCGGCGu -5'
28853 5' -53.8 NC_006146.1 + 42411 0.68 0.923497
Target:  5'- --cGACGCCGuccucgaaGGCGAGAcgcagcugggugcgcGCCGCCaGCAu -3'
miRNA:   3'- cuaUUGCGGC--------UCGUUUU---------------CGGCGG-CGU- -5'
28853 5' -53.8 NC_006146.1 + 42687 0.66 0.958751
Target:  5'- ---cGCGCCGAaagaGCGucuGGCCcggcGCCGCGg -3'
miRNA:   3'- cuauUGCGGCU----CGUuu-UCGG----CGGCGU- -5'
28853 5' -53.8 NC_006146.1 + 42736 0.68 0.915453
Target:  5'- ---cGCGgauCCGGGCGGu-GCUGCCGCAc -3'
miRNA:   3'- cuauUGC---GGCUCGUUuuCGGCGGCGU- -5'
28853 5' -53.8 NC_006146.1 + 43004 0.69 0.882826
Target:  5'- ----cCGCCGGgugagagguGCGAGGGCUGCCGUc -3'
miRNA:   3'- cuauuGCGGCU---------CGUUUUCGGCGGCGu -5'
28853 5' -53.8 NC_006146.1 + 44688 0.71 0.801114
Target:  5'- cGAUGAUGCCGguguGGCGGcGGUgGCCGUg -3'
miRNA:   3'- -CUAUUGCGGC----UCGUUuUCGgCGGCGu -5'
28853 5' -53.8 NC_006146.1 + 45798 0.77 0.441387
Target:  5'- --gGACgGCCGAG-GAAGGCCGCCGCc -3'
miRNA:   3'- cuaUUG-CGGCUCgUUUUCGGCGGCGu -5'
28853 5' -53.8 NC_006146.1 + 46058 0.66 0.965748
Target:  5'- --gGACGCagCGAGUgccauAGCUGCUGCAg -3'
miRNA:   3'- cuaUUGCG--GCUCGuuu--UCGGCGGCGU- -5'
28853 5' -53.8 NC_006146.1 + 46772 0.67 0.946512
Target:  5'- --cGACcCCGGGCGGAuggcuggccGGCCGgCGCGa -3'
miRNA:   3'- cuaUUGcGGCUCGUUU---------UCGGCgGCGU- -5'
28853 5' -53.8 NC_006146.1 + 46964 0.69 0.85256
Target:  5'- cGUAuuuCGCCG-GCcc-GGCCGCCGCc -3'
miRNA:   3'- cUAUu--GCGGCuCGuuuUCGGCGGCGu -5'
28853 5' -53.8 NC_006146.1 + 48242 0.74 0.620824
Target:  5'- --gAGCGCCGcGCGGAGGgcccCCGCCGCc -3'
miRNA:   3'- cuaUUGCGGCuCGUUUUC----GGCGGCGu -5'
28853 5' -53.8 NC_006146.1 + 48757 0.71 0.773136
Target:  5'- ---uGCGCCcGGCcuccagcAGCCGCCGCAg -3'
miRNA:   3'- cuauUGCGGcUCGuuu----UCGGCGGCGU- -5'
28853 5' -53.8 NC_006146.1 + 50373 0.68 0.921249
Target:  5'- -----gGCC-AGCAGucccGCCGCCGCAu -3'
miRNA:   3'- cuauugCGGcUCGUUuu--CGGCGGCGU- -5'
28853 5' -53.8 NC_006146.1 + 51147 0.73 0.662485
Target:  5'- aGGUGACGaaGcGGCAGAGGgCGCCGCu -3'
miRNA:   3'- -CUAUUGCggC-UCGUUUUCgGCGGCGu -5'
28853 5' -53.8 NC_006146.1 + 51467 0.69 0.85256
Target:  5'- aGGUGugGagaUGGGCGGGGGCUGCgGCGu -3'
miRNA:   3'- -CUAUugCg--GCUCGUUUUCGGCGgCGU- -5'
28853 5' -53.8 NC_006146.1 + 51728 1.08 0.005115
Target:  5'- gGAUAACGCCGAGCAAAAGCCGCCGCAu -3'
miRNA:   3'- -CUAUUGCGGCUCGUUUUCGGCGGCGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.