miRNA display CGI


Results 1 - 20 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28853 5' -53.8 NC_006146.1 + 13055 0.66 0.958751
Target:  5'- --aGACuCCGGGCcccAAGGCgGCCGCc -3'
miRNA:   3'- cuaUUGcGGCUCGu--UUUCGgCGGCGu -5'
28853 5' -53.8 NC_006146.1 + 13556 0.7 0.818989
Target:  5'- --aGGCGCCGGGCGccGGGCUG-CGCAa -3'
miRNA:   3'- cuaUUGCGGCUCGUu-UUCGGCgGCGU- -5'
28853 5' -53.8 NC_006146.1 + 13806 0.69 0.868133
Target:  5'- --cGACGCCGAGUAcuuauuGGGCCGCUucucggugcugGCGg -3'
miRNA:   3'- cuaUUGCGGCUCGUu-----UUCGGCGG-----------CGU- -5'
28853 5' -53.8 NC_006146.1 + 15035 0.66 0.965748
Target:  5'- --gGGCGCCuGGCcAGGGCcCGCCGg- -3'
miRNA:   3'- cuaUUGCGGcUCGuUUUCG-GCGGCgu -5'
28853 5' -53.8 NC_006146.1 + 15166 0.69 0.882826
Target:  5'- --cGACGCCGuggaAGCGcugAAGGCCGaCUGCGc -3'
miRNA:   3'- cuaUUGCGGC----UCGU---UUUCGGC-GGCGU- -5'
28853 5' -53.8 NC_006146.1 + 15658 0.68 0.909412
Target:  5'- --gAGCGCCGAGCAccuGCaCGCCc-- -3'
miRNA:   3'- cuaUUGCGGCUCGUuuuCG-GCGGcgu -5'
28853 5' -53.8 NC_006146.1 + 16133 0.66 0.958751
Target:  5'- --aGACuCCGGGCcccAAGGCgGCCGCc -3'
miRNA:   3'- cuaUUGcGGCUCGu--UUUCGgCGGCGu -5'
28853 5' -53.8 NC_006146.1 + 19211 0.66 0.958751
Target:  5'- --aGACuCCGGGCcccAAGGCgGCCGCc -3'
miRNA:   3'- cuaUUGcGGCUCGu--UUUCGgCGGCGu -5'
28853 5' -53.8 NC_006146.1 + 20554 0.67 0.941483
Target:  5'- uGAUAACGCCggaagagGAGCAcagacuAGCCgGCCuGCGc -3'
miRNA:   3'- -CUAUUGCGG-------CUCGUuu----UCGG-CGG-CGU- -5'
28853 5' -53.8 NC_006146.1 + 22289 0.66 0.958751
Target:  5'- --aGACuCCGGGCcccAAGGCgGCCGCc -3'
miRNA:   3'- cuaUUGcGGCUCGu--UUUCGgCGGCGu -5'
28853 5' -53.8 NC_006146.1 + 23734 0.69 0.860454
Target:  5'- --gGGCGCCG-GUcuGcGCCGCCGCc -3'
miRNA:   3'- cuaUUGCGGCuCGuuUuCGGCGGCGu -5'
28853 5' -53.8 NC_006146.1 + 25367 0.66 0.958751
Target:  5'- --aGACuCCGGGCcccAAGGCgGCCGCc -3'
miRNA:   3'- cuaUUGcGGCUCGu--UUUCGgCGGCGu -5'
28853 5' -53.8 NC_006146.1 + 26055 0.66 0.958751
Target:  5'- -----aGCCGcuGCAAuuGGcCCGCCGCAa -3'
miRNA:   3'- cuauugCGGCu-CGUUu-UC-GGCGGCGU- -5'
28853 5' -53.8 NC_006146.1 + 28445 0.66 0.958751
Target:  5'- --aGACuCCGGGCcccAAGGCgGCCGCc -3'
miRNA:   3'- cuaUUGcGGCUCGu--UUUCGgCGGCGu -5'
28853 5' -53.8 NC_006146.1 + 28578 0.71 0.801114
Target:  5'- uGUAGCGCC-AGCGAcAGCCGCUuCAc -3'
miRNA:   3'- cUAUUGCGGcUCGUUuUCGGCGGcGU- -5'
28853 5' -53.8 NC_006146.1 + 33112 0.69 0.85176
Target:  5'- gGGUGGcCGCCG-GCGGguucgccGGGCCGCUGCc -3'
miRNA:   3'- -CUAUU-GCGGCuCGUU-------UUCGGCGGCGu -5'
28853 5' -53.8 NC_006146.1 + 33160 0.7 0.810135
Target:  5'- gGGUGGCccgGCUGGGCAccgccgcGCCGCCGCu -3'
miRNA:   3'- -CUAUUG---CGGCUCGUuuu----CGGCGGCGu -5'
28853 5' -53.8 NC_006146.1 + 33236 0.69 0.85176
Target:  5'- gGGUGGcCGCCG-GCGGguccgccGGGCCGCUGCc -3'
miRNA:   3'- -CUAUU-GCGGCuCGUU-------UUCGGCGGCGu -5'
28853 5' -53.8 NC_006146.1 + 33284 0.7 0.810135
Target:  5'- gGGUGGCccgGCUGGGCAccgcugcGCCGCCGCu -3'
miRNA:   3'- -CUAUUG---CGGCUCGUuuu----CGGCGGCGu -5'
28853 5' -53.8 NC_006146.1 + 33350 0.67 0.926796
Target:  5'- --gGGCaGCCGGGU---GGCCGCCGg- -3'
miRNA:   3'- cuaUUG-CGGCUCGuuuUCGGCGGCgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.