miRNA display CGI


Results 1 - 20 of 166 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28853 5' -53.8 NC_006146.1 + 45798 0.77 0.441387
Target:  5'- --gGACgGCCGAG-GAAGGCCGCCGCc -3'
miRNA:   3'- cuaUUG-CGGCUCgUUUUCGGCGGCGu -5'
28853 5' -53.8 NC_006146.1 + 131085 0.71 0.791934
Target:  5'- cGAggcCGCCGGGCcgucaacGGCCGCCGUc -3'
miRNA:   3'- -CUauuGCGGCUCGuuu----UCGGCGGCGu -5'
28853 5' -53.8 NC_006146.1 + 44688 0.71 0.801114
Target:  5'- cGAUGAUGCCGguguGGCGGcGGUgGCCGUg -3'
miRNA:   3'- -CUAUUGCGGC----UCGUUuUCGgCGGCGu -5'
28853 5' -53.8 NC_006146.1 + 154230 0.66 0.965748
Target:  5'- cGUAACGCCGcacaccguuAGCc-AGGCCGCUGg- -3'
miRNA:   3'- cUAUUGCGGC---------UCGuuUUCGGCGGCgu -5'
28853 5' -53.8 NC_006146.1 + 56592 0.75 0.558745
Target:  5'- --gGGCGCCGAGCcc--GCCGCCGg- -3'
miRNA:   3'- cuaUUGCGGCUCGuuuuCGGCGGCgu -5'
28853 5' -53.8 NC_006146.1 + 70211 0.74 0.610411
Target:  5'- --cAGCGCCGGGUgccGAGGGCCGCgaGCGu -3'
miRNA:   3'- cuaUUGCGGCUCG---UUUUCGGCGg-CGU- -5'
28853 5' -53.8 NC_006146.1 + 129061 0.74 0.620824
Target:  5'- --aGACGCCGGcGCAGAcAGCCcCCGCGa -3'
miRNA:   3'- cuaUUGCGGCU-CGUUU-UCGGcGGCGU- -5'
28853 5' -53.8 NC_006146.1 + 56388 0.74 0.631247
Target:  5'- ----cCGCCGGGUAAGcguGGCCGCuCGCGa -3'
miRNA:   3'- cuauuGCGGCUCGUUU---UCGGCG-GCGU- -5'
28853 5' -53.8 NC_006146.1 + 52840 0.73 0.683198
Target:  5'- --gAGgGCCGAGCc---GCCGCCGCc -3'
miRNA:   3'- cuaUUgCGGCUCGuuuuCGGCGGCGu -5'
28853 5' -53.8 NC_006146.1 + 68710 0.71 0.773136
Target:  5'- -uUGACGCCGuccGCGuccccgAGAGCUGUCGCGg -3'
miRNA:   3'- cuAUUGCGGCu--CGU------UUUCGGCGGCGU- -5'
28853 5' -53.8 NC_006146.1 + 130528 0.72 0.734049
Target:  5'- ---cGCGCCGGGCGgcgaccagGGGGCCuucuccGCCGCAg -3'
miRNA:   3'- cuauUGCGGCUCGU--------UUUCGG------CGGCGU- -5'
28853 5' -53.8 NC_006146.1 + 112394 0.73 0.672859
Target:  5'- --gGACGCC--GCAGGGGCUGCCGUg -3'
miRNA:   3'- cuaUUGCGGcuCGUUUUCGGCGGCGu -5'
28853 5' -53.8 NC_006146.1 + 34216 0.76 0.487796
Target:  5'- ---cGCGCCGcccgcuucaugggGGgGGAGGCCGCCGCAa -3'
miRNA:   3'- cuauUGCGGC-------------UCgUUUUCGGCGGCGU- -5'
28853 5' -53.8 NC_006146.1 + 152233 0.71 0.763536
Target:  5'- uGAUAGCGUCGccuGCGAAGGCCGggcaUGCGa -3'
miRNA:   3'- -CUAUUGCGGCu--CGUUUUCGGCg---GCGU- -5'
28853 5' -53.8 NC_006146.1 + 138046 0.76 0.487796
Target:  5'- ---cGCGCCGcccgcuucaugggGGgGGAGGCCGCCGCAa -3'
miRNA:   3'- cuauUGCGGC-------------UCgUUUUCGGCGGCGU- -5'
28853 5' -53.8 NC_006146.1 + 54953 0.74 0.631247
Target:  5'- ----cCGCgGGGCGAccGCCGCCGCc -3'
miRNA:   3'- cuauuGCGgCUCGUUuuCGGCGGCGu -5'
28853 5' -53.8 NC_006146.1 + 48757 0.71 0.773136
Target:  5'- ---uGCGCCcGGCcuccagcAGCCGCCGCAg -3'
miRNA:   3'- cuauUGCGGcUCGuuu----UCGGCGGCGU- -5'
28853 5' -53.8 NC_006146.1 + 128180 0.71 0.801114
Target:  5'- --cGACGCCGGGaggcggcccaGGGGGgCGCCGCGg -3'
miRNA:   3'- cuaUUGCGGCUCg---------UUUUCgGCGGCGU- -5'
28853 5' -53.8 NC_006146.1 + 90162 0.76 0.518313
Target:  5'- --aGGCaGCCGAgGUAGAGGCCGCgGCAg -3'
miRNA:   3'- cuaUUG-CGGCU-CGUUUUCGGCGgCGU- -5'
28853 5' -53.8 NC_006146.1 + 48242 0.74 0.620824
Target:  5'- --gAGCGCCGcGCGGAGGgcccCCGCCGCc -3'
miRNA:   3'- cuaUUGCGGCuCGUUUUC----GGCGGCGu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.