miRNA display CGI


Results 1 - 20 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28853 5' -53.8 NC_006146.1 + 51728 1.08 0.005115
Target:  5'- gGAUAACGCCGAGCAAAAGCCGCCGCAu -3'
miRNA:   3'- -CUAUUGCGGCUCGUUUUCGGCGGCGU- -5'
28853 5' -53.8 NC_006146.1 + 110123 0.8 0.316596
Target:  5'- --aGACGCCGGGCAuuAAGCC-CCGCAc -3'
miRNA:   3'- cuaUUGCGGCUCGUu-UUCGGcGGCGU- -5'
28853 5' -53.8 NC_006146.1 + 45798 0.77 0.441387
Target:  5'- --gGACgGCCGAG-GAAGGCCGCCGCc -3'
miRNA:   3'- cuaUUG-CGGCUCgUUUUCGGCGGCGu -5'
28853 5' -53.8 NC_006146.1 + 34216 0.76 0.487796
Target:  5'- ---cGCGCCGcccgcuucaugggGGgGGAGGCCGCCGCAa -3'
miRNA:   3'- cuauUGCGGC-------------UCgUUUUCGGCGGCGU- -5'
28853 5' -53.8 NC_006146.1 + 138046 0.76 0.487796
Target:  5'- ---cGCGCCGcccgcuucaugggGGgGGAGGCCGCCGCAa -3'
miRNA:   3'- cuauUGCGGC-------------UCgUUUUCGGCGGCGU- -5'
28853 5' -53.8 NC_006146.1 + 127665 0.76 0.508382
Target:  5'- -cUGGCGCCGAGgcacccCAAAGGuCCGCUGCAc -3'
miRNA:   3'- cuAUUGCGGCUC------GUUUUC-GGCGGCGU- -5'
28853 5' -53.8 NC_006146.1 + 90162 0.76 0.518313
Target:  5'- --aGGCaGCCGAgGUAGAGGCCGCgGCAg -3'
miRNA:   3'- cuaUUG-CGGCU-CGUUUUCGGCGgCGU- -5'
28853 5' -53.8 NC_006146.1 + 61581 0.75 0.538399
Target:  5'- ---cACGCUGAGgAAGAGCCGgCUGCAg -3'
miRNA:   3'- cuauUGCGGCUCgUUUUCGGC-GGCGU- -5'
28853 5' -53.8 NC_006146.1 + 56592 0.75 0.558745
Target:  5'- --gGGCGCCGAGCcc--GCCGCCGg- -3'
miRNA:   3'- cuaUUGCGGCUCGuuuuCGGCGGCgu -5'
28853 5' -53.8 NC_006146.1 + 70211 0.74 0.610411
Target:  5'- --cAGCGCCGGGUgccGAGGGCCGCgaGCGu -3'
miRNA:   3'- cuaUUGCGGCUCG---UUUUCGGCGg-CGU- -5'
28853 5' -53.8 NC_006146.1 + 129061 0.74 0.620824
Target:  5'- --aGACGCCGGcGCAGAcAGCCcCCGCGa -3'
miRNA:   3'- cuaUUGCGGCU-CGUUU-UCGGcGGCGU- -5'
28853 5' -53.8 NC_006146.1 + 48242 0.74 0.620824
Target:  5'- --gAGCGCCGcGCGGAGGgcccCCGCCGCc -3'
miRNA:   3'- cuaUUGCGGCuCGUUUUC----GGCGGCGu -5'
28853 5' -53.8 NC_006146.1 + 56388 0.74 0.631247
Target:  5'- ----cCGCCGGGUAAGcguGGCCGCuCGCGa -3'
miRNA:   3'- cuauuGCGGCUCGUUU---UCGGCG-GCGU- -5'
28853 5' -53.8 NC_006146.1 + 54953 0.74 0.631247
Target:  5'- ----cCGCgGGGCGAccGCCGCCGCc -3'
miRNA:   3'- cuauuGCGgCUCGUUuuCGGCGGCGu -5'
28853 5' -53.8 NC_006146.1 + 51147 0.73 0.662485
Target:  5'- aGGUGACGaaGcGGCAGAGGgCGCCGCu -3'
miRNA:   3'- -CUAUUGCggC-UCGUUUUCgGCGGCGu -5'
28853 5' -53.8 NC_006146.1 + 62597 0.73 0.671823
Target:  5'- aAUGGCGUCcgccgcaggcaauGAGCGGGAGCUGCUGCGc -3'
miRNA:   3'- cUAUUGCGG-------------CUCGUUUUCGGCGGCGU- -5'
28853 5' -53.8 NC_006146.1 + 101839 0.73 0.672859
Target:  5'- --gGGC-CCGAGCGcucGGGCUGCCGCAc -3'
miRNA:   3'- cuaUUGcGGCUCGUu--UUCGGCGGCGU- -5'
28853 5' -53.8 NC_006146.1 + 112394 0.73 0.672859
Target:  5'- --gGACGCC--GCAGGGGCUGCCGUg -3'
miRNA:   3'- cuaUUGCGGcuCGUUUUCGGCGGCGu -5'
28853 5' -53.8 NC_006146.1 + 52840 0.73 0.683198
Target:  5'- --gAGgGCCGAGCc---GCCGCCGCc -3'
miRNA:   3'- cuaUUgCGGCUCGuuuuCGGCGGCGu -5'
28853 5' -53.8 NC_006146.1 + 122157 0.72 0.713916
Target:  5'- --gGAgGCCGGGCGcaaggagaaGGAGCUGCUGCGc -3'
miRNA:   3'- cuaUUgCGGCUCGU---------UUUCGGCGGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.