miRNA display CGI


Results 1 - 20 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28853 5' -53.8 NC_006146.1 + 114037 0.66 0.965748
Target:  5'- --gGGCgGCCGccagccccAGCcAAAGCUGCCGCc -3'
miRNA:   3'- cuaUUG-CGGC--------UCGuUUUCGGCGGCGu -5'
28853 5' -53.8 NC_006146.1 + 25367 0.66 0.958751
Target:  5'- --aGACuCCGGGCcccAAGGCgGCCGCc -3'
miRNA:   3'- cuaUUGcGGCUCGu--UUUCGgCGGCGu -5'
28853 5' -53.8 NC_006146.1 + 28445 0.66 0.958751
Target:  5'- --aGACuCCGGGCcccAAGGCgGCCGCc -3'
miRNA:   3'- cuaUUGcGGCUCGu--UUUCGgCGGCGu -5'
28853 5' -53.8 NC_006146.1 + 154230 0.66 0.965748
Target:  5'- cGUAACGCCGcacaccguuAGCc-AGGCCGCUGg- -3'
miRNA:   3'- cUAUUGCGGC---------UCGuuUUCGGCGGCgu -5'
28853 5' -53.8 NC_006146.1 + 19211 0.66 0.958751
Target:  5'- --aGACuCCGGGCcccAAGGCgGCCGCc -3'
miRNA:   3'- cuaUUGcGGCUCGu--UUUCGgCGGCGu -5'
28853 5' -53.8 NC_006146.1 + 157704 0.66 0.95083
Target:  5'- gGAUGGCGuuGuu---GAGCCGCUGCu -3'
miRNA:   3'- -CUAUUGCggCucguuUUCGGCGGCGu -5'
28853 5' -53.8 NC_006146.1 + 55475 0.66 0.954908
Target:  5'- --gAugGCCGcgGGCGAGaacgaggcccGGCCGCCaGCu -3'
miRNA:   3'- cuaUugCGGC--UCGUUU----------UCGGCGG-CGu -5'
28853 5' -53.8 NC_006146.1 + 128974 0.66 0.954908
Target:  5'- --gAACGCCcccgagauugaaGAGCAGGuuGCCGuCCGCc -3'
miRNA:   3'- cuaUUGCGG------------CUCGUUUu-CGGC-GGCGu -5'
28853 5' -53.8 NC_006146.1 + 13055 0.66 0.958751
Target:  5'- --aGACuCCGGGCcccAAGGCgGCCGCc -3'
miRNA:   3'- cuaUUGcGGCUCGu--UUUCGgCGGCGu -5'
28853 5' -53.8 NC_006146.1 + 22289 0.66 0.958751
Target:  5'- --aGACuCCGGGCcccAAGGCgGCCGCc -3'
miRNA:   3'- cuaUUGcGGCUCGu--UUUCGgCGGCGu -5'
28853 5' -53.8 NC_006146.1 + 16133 0.66 0.958751
Target:  5'- --aGACuCCGGGCcccAAGGCgGCCGCc -3'
miRNA:   3'- cuaUUGcGGCUCGu--UUUCGgCGGCGu -5'
28853 5' -53.8 NC_006146.1 + 39701 0.66 0.950409
Target:  5'- --cAGCGCCGcuccggaGGCAGAGGCCuGCaccaGCu -3'
miRNA:   3'- cuaUUGCGGC-------UCGUUUUCGG-CGg---CGu -5'
28853 5' -53.8 NC_006146.1 + 15035 0.66 0.965748
Target:  5'- --gGGCGCCuGGCcAGGGCcCGCCGg- -3'
miRNA:   3'- cuaUUGCGGcUCGuUUUCG-GCGGCgu -5'
28853 5' -53.8 NC_006146.1 + 71455 0.66 0.962363
Target:  5'- -cUGGCGCCGAggaGCGAGGGCCucaUGCu -3'
miRNA:   3'- cuAUUGCGGCU---CGUUUUCGGcg-GCGu -5'
28853 5' -53.8 NC_006146.1 + 42687 0.66 0.958751
Target:  5'- ---cGCGCCGAaagaGCGucuGGCCcggcGCCGCGg -3'
miRNA:   3'- cuauUGCGGCU----CGUuu-UCGG----CGGCGU- -5'
28853 5' -53.8 NC_006146.1 + 139408 0.66 0.958751
Target:  5'- --cGGCGCCGGGgGAGGuGCCuGCUGUu -3'
miRNA:   3'- cuaUUGCGGCUCgUUUU-CGG-CGGCGu -5'
28853 5' -53.8 NC_006146.1 + 75656 0.66 0.958751
Target:  5'- uAUGACGCCGcgggucAGCAGucauGGCCGCU-CAa -3'
miRNA:   3'- cUAUUGCGGC------UCGUUu---UCGGCGGcGU- -5'
28853 5' -53.8 NC_006146.1 + 40158 0.66 0.958751
Target:  5'- --cGGCGucuucuCCGGGgAAGAGcCCGCCGCc -3'
miRNA:   3'- cuaUUGC------GGCUCgUUUUC-GGCGGCGu -5'
28853 5' -53.8 NC_006146.1 + 26055 0.66 0.958751
Target:  5'- -----aGCCGcuGCAAuuGGcCCGCCGCAa -3'
miRNA:   3'- cuauugCGGCu-CGUUu-UC-GGCGGCGU- -5'
28853 5' -53.8 NC_006146.1 + 124185 0.66 0.954908
Target:  5'- ----cCGCCc-GCcucGGAGCCGCCGCGg -3'
miRNA:   3'- cuauuGCGGcuCGu--UUUCGGCGGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.