miRNA display CGI


Results 41 - 60 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28854 3' -63.9 NC_006146.1 + 92299 0.7 0.400266
Target:  5'- gCGGg-CCCgGCCUgggGCuGCUGCUGGGg -3'
miRNA:   3'- gGCCagGGGgCGGAa--CG-CGACGGCCU- -5'
28854 3' -63.9 NC_006146.1 + 51090 1.09 0.000728
Target:  5'- gCCGGUCCCCCGCCUUGCGCUGCCGGAu -3'
miRNA:   3'- -GGCCAGGGGGCGGAACGCGACGGCCU- -5'
28854 3' -63.9 NC_006146.1 + 3256 0.68 0.47592
Target:  5'- cCCgGGUCCCCCGgCa--CGC-GCCGGGc -3'
miRNA:   3'- -GG-CCAGGGGGCgGaacGCGaCGGCCU- -5'
28854 3' -63.9 NC_006146.1 + 35127 0.68 0.484767
Target:  5'- cCCGGccacCCCCCGCCggaGCGggGCagCGGAc -3'
miRNA:   3'- -GGCCa---GGGGGCGGaa-CGCgaCG--GCCU- -5'
28854 3' -63.9 NC_006146.1 + 147766 0.66 0.615918
Target:  5'- gCGGgcgCCCuuGCCUggaggcagagacuggGCgGCUGCgGGGg -3'
miRNA:   3'- gGCCa--GGGggCGGAa--------------CG-CGACGgCCU- -5'
28854 3' -63.9 NC_006146.1 + 141611 0.66 0.615918
Target:  5'- gCGGgcgCCCuuGCCUggaggcagagacuggGCgGCUGCgGGGg -3'
miRNA:   3'- gGCCa--GGGggCGGAa--------------CG-CGACGgCCU- -5'
28854 3' -63.9 NC_006146.1 + 801 0.66 0.605411
Target:  5'- gCCGG-CCCCC-CCUgcgGCGCcgGCCc-- -3'
miRNA:   3'- -GGCCaGGGGGcGGAa--CGCGa-CGGccu -5'
28854 3' -63.9 NC_006146.1 + 70990 0.66 0.577833
Target:  5'- cCCGGag-CCCGCuCUUGCGCccggggggcagaggcGCCGGAu -3'
miRNA:   3'- -GGCCaggGGGCG-GAACGCGa--------------CGGCCU- -5'
28854 3' -63.9 NC_006146.1 + 92090 0.66 0.576886
Target:  5'- gCGG--CCCgGCCUgggGCuGCUGCUGGGg -3'
miRNA:   3'- gGCCagGGGgCGGAa--CG-CGACGGCCU- -5'
28854 3' -63.9 NC_006146.1 + 14591 0.66 0.574048
Target:  5'- cCCGGaCCCgCGCCUcuacaucaccucugUGCcCUGCUGGc -3'
miRNA:   3'- -GGCCaGGGgGCGGA--------------ACGcGACGGCCu -5'
28854 3' -63.9 NC_006146.1 + 100694 0.67 0.539356
Target:  5'- gCGG-CCCUCGgCacccgGCGCUGCgGGGg -3'
miRNA:   3'- gGCCaGGGGGCgGaa---CGCGACGgCCU- -5'
28854 3' -63.9 NC_006146.1 + 35313 0.68 0.484767
Target:  5'- cCCGGccacCCCCCGCCggaGCGggGCagCGGAc -3'
miRNA:   3'- -GGCCa---GGGGGCGGaa-CGCgaCG--GCCU- -5'
28854 3' -63.9 NC_006146.1 + 35220 0.68 0.484767
Target:  5'- cCCGGccacCCCCCGCCggaGCGggGCagCGGAc -3'
miRNA:   3'- -GGCCa---GGGGGCGGaa-CGCgaCG--GCCU- -5'
28854 3' -63.9 NC_006146.1 + 35034 0.68 0.484767
Target:  5'- cCCGGccacCCCCCGCCggaGCGggGCagCGGAc -3'
miRNA:   3'- -GGCCa---GGGGGCGGaa-CGCgaCG--GCCU- -5'
28854 3' -63.9 NC_006146.1 + 34941 0.68 0.484767
Target:  5'- cCCGGccacCCCCCGCCggaGCGggGCagCGGAc -3'
miRNA:   3'- -GGCCa---GGGGGCGGaa-CGCgaCG--GCCU- -5'
28854 3' -63.9 NC_006146.1 + 34849 0.68 0.484767
Target:  5'- cCCGGccacCCCCCGCCggaGCGggGCagCGGAc -3'
miRNA:   3'- -GGCCa---GGGGGCGGaa-CGCgaCG--GCCU- -5'
28854 3' -63.9 NC_006146.1 + 34756 0.68 0.484767
Target:  5'- cCCGGccacCCCCCGCCggaGCGggGCagCGGAc -3'
miRNA:   3'- -GGCCa---GGGGGCGGaa-CGCgaCG--GCCU- -5'
28854 3' -63.9 NC_006146.1 + 34663 0.68 0.484767
Target:  5'- cCCGGccacCCCCCGCCggaGCGggGCagCGGAc -3'
miRNA:   3'- -GGCCa---GGGGGCGGaa-CGCgaCG--GCCU- -5'
28854 3' -63.9 NC_006146.1 + 34570 0.68 0.484767
Target:  5'- cCCGGccacCCCCCGCCggaGCGggGCagCGGAc -3'
miRNA:   3'- -GGCCa---GGGGGCGGaa-CGCgaCG--GCCU- -5'
28854 3' -63.9 NC_006146.1 + 34477 0.68 0.484767
Target:  5'- cCCGGccacCCCCCGCCggaGCGggGCagCGGAc -3'
miRNA:   3'- -GGCCa---GGGGGCGGaa-CGCgaCG--GCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.