miRNA display CGI


Results 21 - 40 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28854 3' -63.9 NC_006146.1 + 131049 0.71 0.332735
Target:  5'- cCCGGgcacacagCCCCCGCCggcccacUGUGCgGCCGaGGc -3'
miRNA:   3'- -GGCCa-------GGGGGCGGa------ACGCGaCGGC-CU- -5'
28854 3' -63.9 NC_006146.1 + 70189 0.67 0.567439
Target:  5'- gCCGGUcccacacccaCCCCCGCa--GCGCcgggUGCCGaGGg -3'
miRNA:   3'- -GGCCA----------GGGGGCGgaaCGCG----ACGGC-CU- -5'
28854 3' -63.9 NC_006146.1 + 151762 0.69 0.458473
Target:  5'- gCUGG-CCCCgucaGCCUUGCGcCUGCCc-- -3'
miRNA:   3'- -GGCCaGGGGg---CGGAACGC-GACGGccu -5'
28854 3' -63.9 NC_006146.1 + 46977 0.7 0.376804
Target:  5'- cCCGG-CCgCCGCCaggaaUUGCGCccGUCGGAc -3'
miRNA:   3'- -GGCCaGGgGGCGG-----AACGCGa-CGGCCU- -5'
28854 3' -63.9 NC_006146.1 + 141611 0.66 0.615918
Target:  5'- gCGGgcgCCCuuGCCUggaggcagagacuggGCgGCUGCgGGGg -3'
miRNA:   3'- gGCCa--GGGggCGGAa--------------CG-CGACGgCCU- -5'
28854 3' -63.9 NC_006146.1 + 100694 0.67 0.539356
Target:  5'- gCGG-CCCUCGgCacccgGCGCUGCgGGGg -3'
miRNA:   3'- gGCCaGGGGGCgGaa---CGCGACGgCCU- -5'
28854 3' -63.9 NC_006146.1 + 157000 0.66 0.615918
Target:  5'- gCGGgcgCCCuuGCCUggaggcagagacuggGCgGCUGCgGGGg -3'
miRNA:   3'- gGCCa--GGGggCGGAa--------------CG-CGACGgCCU- -5'
28854 3' -63.9 NC_006146.1 + 34570 0.68 0.484767
Target:  5'- cCCGGccacCCCCCGCCggaGCGggGCagCGGAc -3'
miRNA:   3'- -GGCCa---GGGGGCGGaa-CGCgaCG--GCCU- -5'
28854 3' -63.9 NC_006146.1 + 34663 0.68 0.484767
Target:  5'- cCCGGccacCCCCCGCCggaGCGggGCagCGGAc -3'
miRNA:   3'- -GGCCa---GGGGGCGGaa-CGCgaCG--GCCU- -5'
28854 3' -63.9 NC_006146.1 + 34756 0.68 0.484767
Target:  5'- cCCGGccacCCCCCGCCggaGCGggGCagCGGAc -3'
miRNA:   3'- -GGCCa---GGGGGCGGaa-CGCgaCG--GCCU- -5'
28854 3' -63.9 NC_006146.1 + 14591 0.66 0.574048
Target:  5'- cCCGGaCCCgCGCCUcuacaucaccucugUGCcCUGCUGGc -3'
miRNA:   3'- -GGCCaGGGgGCGGA--------------ACGcGACGGCCu -5'
28854 3' -63.9 NC_006146.1 + 92090 0.66 0.576886
Target:  5'- gCGG--CCCgGCCUgggGCuGCUGCUGGGg -3'
miRNA:   3'- gGCCagGGGgCGGAa--CG-CGACGGCCU- -5'
28854 3' -63.9 NC_006146.1 + 70990 0.66 0.577833
Target:  5'- cCCGGag-CCCGCuCUUGCGCccggggggcagaggcGCCGGAu -3'
miRNA:   3'- -GGCCaggGGGCG-GAACGCGa--------------CGGCCU- -5'
28854 3' -63.9 NC_006146.1 + 147766 0.66 0.615918
Target:  5'- gCGGgcgCCCuuGCCUggaggcagagacuggGCgGCUGCgGGGg -3'
miRNA:   3'- gGCCa--GGGggCGGAa--------------CG-CGACGgCCU- -5'
28854 3' -63.9 NC_006146.1 + 35313 0.68 0.484767
Target:  5'- cCCGGccacCCCCCGCCggaGCGggGCagCGGAc -3'
miRNA:   3'- -GGCCa---GGGGGCGGaa-CGCgaCG--GCCU- -5'
28854 3' -63.9 NC_006146.1 + 35220 0.68 0.484767
Target:  5'- cCCGGccacCCCCCGCCggaGCGggGCagCGGAc -3'
miRNA:   3'- -GGCCa---GGGGGCGGaa-CGCgaCG--GCCU- -5'
28854 3' -63.9 NC_006146.1 + 35127 0.68 0.484767
Target:  5'- cCCGGccacCCCCCGCCggaGCGggGCagCGGAc -3'
miRNA:   3'- -GGCCa---GGGGGCGGaa-CGCgaCG--GCCU- -5'
28854 3' -63.9 NC_006146.1 + 35034 0.68 0.484767
Target:  5'- cCCGGccacCCCCCGCCggaGCGggGCagCGGAc -3'
miRNA:   3'- -GGCCa---GGGGGCGGaa-CGCgaCG--GCCU- -5'
28854 3' -63.9 NC_006146.1 + 34941 0.68 0.484767
Target:  5'- cCCGGccacCCCCCGCCggaGCGggGCagCGGAc -3'
miRNA:   3'- -GGCCa---GGGGGCGGaa-CGCgaCG--GCCU- -5'
28854 3' -63.9 NC_006146.1 + 34849 0.68 0.484767
Target:  5'- cCCGGccacCCCCCGCCggaGCGggGCagCGGAc -3'
miRNA:   3'- -GGCCa---GGGGGCGGaa-CGCgaCG--GCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.