miRNA display CGI


Results 21 - 40 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28854 3' -63.9 NC_006146.1 + 169498 0.69 0.408291
Target:  5'- -gGGUCCCgCgggGCCcgGCGCgUGCCGGGg -3'
miRNA:   3'- ggCCAGGGgG---CGGaaCGCG-ACGGCCU- -5'
28854 3' -63.9 NC_006146.1 + 108792 0.69 0.432123
Target:  5'- -aGGUCUCCCGCCgagGCGagcagucCUGCCGc- -3'
miRNA:   3'- ggCCAGGGGGCGGaa-CGC-------GACGGCcu -5'
28854 3' -63.9 NC_006146.1 + 44374 0.69 0.432959
Target:  5'- gCCaGaCCCCCGCCcgggggGCGUgugggGCCGGGc -3'
miRNA:   3'- -GGcCaGGGGGCGGaa----CGCGa----CGGCCU- -5'
28854 3' -63.9 NC_006146.1 + 143015 0.69 0.432959
Target:  5'- cCCGGUCCCCUcCgCUUGCG-UGCCa-- -3'
miRNA:   3'- -GGCCAGGGGGcG-GAACGCgACGGccu -5'
28854 3' -63.9 NC_006146.1 + 33920 0.69 0.449878
Target:  5'- cCCGGccaCCCCCGCCggaGCGggGCagCGGAc -3'
miRNA:   3'- -GGCCa--GGGGGCGGaa-CGCgaCG--GCCU- -5'
28854 3' -63.9 NC_006146.1 + 151762 0.69 0.458473
Target:  5'- gCUGG-CCCCgucaGCCUUGCGcCUGCCc-- -3'
miRNA:   3'- -GGCCaGGGGg---CGGAACGC-GACGGccu -5'
28854 3' -63.9 NC_006146.1 + 98666 0.69 0.458473
Target:  5'- cCUGGUCCCCgUGCCUUcacGCGCaGUgGGu -3'
miRNA:   3'- -GGCCAGGGG-GCGGAA---CGCGaCGgCCu -5'
28854 3' -63.9 NC_006146.1 + 3256 0.68 0.47592
Target:  5'- cCCgGGUCCCCCGgCa--CGC-GCCGGGc -3'
miRNA:   3'- -GG-CCAGGGGGCgGaacGCGaCGGCCU- -5'
28854 3' -63.9 NC_006146.1 + 461 0.68 0.47592
Target:  5'- cCCgGGUCCCCCGgCa--CGC-GCCGGGc -3'
miRNA:   3'- -GG-CCAGGGGGCgGaacGCGaCGGCCU- -5'
28854 3' -63.9 NC_006146.1 + 2324 0.68 0.47592
Target:  5'- cCCgGGUCCCCCGgCa--CGC-GCCGGGc -3'
miRNA:   3'- -GG-CCAGGGGGCgGaacGCGaCGGCCU- -5'
28854 3' -63.9 NC_006146.1 + 1392 0.68 0.47592
Target:  5'- cCCgGGUCCCCCGgCa--CGC-GCCGGGc -3'
miRNA:   3'- -GG-CCAGGGGGCgGaacGCGaCGGCCU- -5'
28854 3' -63.9 NC_006146.1 + 55350 0.68 0.47592
Target:  5'- gCGGUcgccuccagCCCCCGCCaccGCGC-GCgGGAc -3'
miRNA:   3'- gGCCA---------GGGGGCGGaa-CGCGaCGgCCU- -5'
28854 3' -63.9 NC_006146.1 + 34849 0.68 0.484767
Target:  5'- cCCGGccacCCCCCGCCggaGCGggGCagCGGAc -3'
miRNA:   3'- -GGCCa---GGGGGCGGaa-CGCgaCG--GCCU- -5'
28854 3' -63.9 NC_006146.1 + 34477 0.68 0.484767
Target:  5'- cCCGGccacCCCCCGCCggaGCGggGCagCGGAc -3'
miRNA:   3'- -GGCCa---GGGGGCGGaa-CGCgaCG--GCCU- -5'
28854 3' -63.9 NC_006146.1 + 35127 0.68 0.484767
Target:  5'- cCCGGccacCCCCCGCCggaGCGggGCagCGGAc -3'
miRNA:   3'- -GGCCa---GGGGGCGGaa-CGCgaCG--GCCU- -5'
28854 3' -63.9 NC_006146.1 + 35034 0.68 0.484767
Target:  5'- cCCGGccacCCCCCGCCggaGCGggGCagCGGAc -3'
miRNA:   3'- -GGCCa---GGGGGCGGaa-CGCgaCG--GCCU- -5'
28854 3' -63.9 NC_006146.1 + 34941 0.68 0.484767
Target:  5'- cCCGGccacCCCCCGCCggaGCGggGCagCGGAc -3'
miRNA:   3'- -GGCCa---GGGGGCGGaa-CGCgaCG--GCCU- -5'
28854 3' -63.9 NC_006146.1 + 34570 0.68 0.484767
Target:  5'- cCCGGccacCCCCCGCCggaGCGggGCagCGGAc -3'
miRNA:   3'- -GGCCa---GGGGGCGGaa-CGCgaCG--GCCU- -5'
28854 3' -63.9 NC_006146.1 + 34663 0.68 0.484767
Target:  5'- cCCGGccacCCCCCGCCggaGCGggGCagCGGAc -3'
miRNA:   3'- -GGCCa---GGGGGCGGaa-CGCgaCG--GCCU- -5'
28854 3' -63.9 NC_006146.1 + 34756 0.68 0.484767
Target:  5'- cCCGGccacCCCCCGCCggaGCGggGCagCGGAc -3'
miRNA:   3'- -GGCCa---GGGGGCGGaa-CGCgaCG--GCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.