miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28854 3' -63.9 NC_006146.1 + 51090 1.09 0.000728
Target:  5'- gCCGGUCCCCCGCCUUGCGCUGCCGGAu -3'
miRNA:   3'- -GGCCAGGGGGCGGAACGCGACGGCCU- -5'
28854 3' -63.9 NC_006146.1 + 92012 0.78 0.125062
Target:  5'- cCCGGUCCCCCccaGCCUgaggaacauuuaUGCGgagcugcaccggaguCUGCCGGAg -3'
miRNA:   3'- -GGCCAGGGGG---CGGA------------ACGC---------------GACGGCCU- -5'
28854 3' -63.9 NC_006146.1 + 2416 0.74 0.228948
Target:  5'- cCCGGcCCCCCGaCCgugGaCGUgagGCCGGAu -3'
miRNA:   3'- -GGCCaGGGGGC-GGaa-C-GCGa--CGGCCU- -5'
28854 3' -63.9 NC_006146.1 + 105827 0.73 0.266772
Target:  5'- -gGGUCCCCgGCCgacauccggagGCGCUGCCa-- -3'
miRNA:   3'- ggCCAGGGGgCGGaa---------CGCGACGGccu -5'
28854 3' -63.9 NC_006146.1 + 131049 0.71 0.332735
Target:  5'- cCCGGgcacacagCCCCCGCCggcccacUGUGCgGCCGaGGc -3'
miRNA:   3'- -GGCCa-------GGGGGCGGa------ACGCGaCGGC-CU- -5'
28854 3' -63.9 NC_006146.1 + 46977 0.7 0.376804
Target:  5'- cCCGG-CCgCCGCCaggaaUUGCGCccGUCGGAc -3'
miRNA:   3'- -GGCCaGGgGGCGG-----AACGCGa-CGGCCU- -5'
28854 3' -63.9 NC_006146.1 + 38095 0.7 0.384521
Target:  5'- aCCcaUCCCCCGCC-UGCaGCUGCUGa- -3'
miRNA:   3'- -GGccAGGGGGCGGaACG-CGACGGCcu -5'
28854 3' -63.9 NC_006146.1 + 92299 0.7 0.400266
Target:  5'- gCGGg-CCCgGCCUgggGCuGCUGCUGGGg -3'
miRNA:   3'- gGCCagGGGgCGGAa--CG-CGACGGCCU- -5'
28854 3' -63.9 NC_006146.1 + 92239 0.7 0.400266
Target:  5'- gCGGg-CCCgGCCUgugGCuGCUGCUGGGg -3'
miRNA:   3'- gGCCagGGGgCGGAa--CG-CGACGGCCU- -5'
28854 3' -63.9 NC_006146.1 + 92209 0.7 0.400266
Target:  5'- gCGGg-CCCgGCCUgggGCuGCUGCUGGGg -3'
miRNA:   3'- gGCCagGGGgCGGAa--CG-CGACGGCCU- -5'
28854 3' -63.9 NC_006146.1 + 92119 0.7 0.400266
Target:  5'- gCGGg-CCCgGCCUgggGCuGCUGCUGGGg -3'
miRNA:   3'- gGCCagGGGgCGGAa--CG-CGACGGCCU- -5'
28854 3' -63.9 NC_006146.1 + 92000 0.7 0.400266
Target:  5'- gCGGg-CCCgGCCUgggGCuGCUGCUGGGg -3'
miRNA:   3'- gGCCagGGGgCGGAa--CG-CGACGGCCU- -5'
28854 3' -63.9 NC_006146.1 + 92149 0.7 0.400266
Target:  5'- gCGGg-CCCgGCCUgggGCuGCUGCUGGGg -3'
miRNA:   3'- gGCCagGGGgCGGAa--CG-CGACGGCCU- -5'
28854 3' -63.9 NC_006146.1 + 92060 0.7 0.400266
Target:  5'- gCGGg-CCCgGCCUgggGCuGCUGCUGGGg -3'
miRNA:   3'- gGCCagGGGgCGGAa--CG-CGACGGCCU- -5'
28854 3' -63.9 NC_006146.1 + 92179 0.7 0.400266
Target:  5'- gCGGg-CCCgGCCUgggGCuGCUGCUGGGg -3'
miRNA:   3'- gGCCagGGGgCGGAa--CG-CGACGGCCU- -5'
28854 3' -63.9 NC_006146.1 + 92269 0.7 0.400266
Target:  5'- gCGGg-CCCgGCCUgggGCuGCUGCUGGGg -3'
miRNA:   3'- gGCCagGGGgCGGAa--CG-CGACGGCCU- -5'
28854 3' -63.9 NC_006146.1 + 92030 0.7 0.400266
Target:  5'- gCGGg-CCCgGCCUgggGCuGCUGCUGGGg -3'
miRNA:   3'- gGCCagGGGgCGGAa--CG-CGACGGCCU- -5'
28854 3' -63.9 NC_006146.1 + 167634 0.69 0.408291
Target:  5'- -gGGUCCCgCgggGCCcgGCGCgUGCCGGGg -3'
miRNA:   3'- ggCCAGGGgG---CGGaaCGCG-ACGGCCU- -5'
28854 3' -63.9 NC_006146.1 + 169498 0.69 0.408291
Target:  5'- -gGGUCCCgCgggGCCcgGCGCgUGCCGGGg -3'
miRNA:   3'- ggCCAGGGgG---CGGaaCGCG-ACGGCCU- -5'
28854 3' -63.9 NC_006146.1 + 168566 0.69 0.408291
Target:  5'- -gGGUCCCgCgggGCCcgGCGCgUGCCGGGg -3'
miRNA:   3'- ggCCAGGGgG---CGGaaCGCG-ACGGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.