miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28854 3' -63.9 NC_006146.1 + 461 0.68 0.47592
Target:  5'- cCCgGGUCCCCCGgCa--CGC-GCCGGGc -3'
miRNA:   3'- -GG-CCAGGGGGCgGaacGCGaCGGCCU- -5'
28854 3' -63.9 NC_006146.1 + 801 0.66 0.605411
Target:  5'- gCCGG-CCCCC-CCUgcgGCGCcgGCCc-- -3'
miRNA:   3'- -GGCCaGGGGGcGGAa--CGCGa-CGGccu -5'
28854 3' -63.9 NC_006146.1 + 1392 0.68 0.47592
Target:  5'- cCCgGGUCCCCCGgCa--CGC-GCCGGGc -3'
miRNA:   3'- -GG-CCAGGGGGCgGaacGCGaCGGCCU- -5'
28854 3' -63.9 NC_006146.1 + 2324 0.68 0.47592
Target:  5'- cCCgGGUCCCCCGgCa--CGC-GCCGGGc -3'
miRNA:   3'- -GG-CCAGGGGGCgGaacGCGaCGGCCU- -5'
28854 3' -63.9 NC_006146.1 + 2416 0.74 0.228948
Target:  5'- cCCGGcCCCCCGaCCgugGaCGUgagGCCGGAu -3'
miRNA:   3'- -GGCCaGGGGGC-GGaa-C-GCGa--CGGCCU- -5'
28854 3' -63.9 NC_006146.1 + 3256 0.68 0.47592
Target:  5'- cCCgGGUCCCCCGgCa--CGC-GCCGGGc -3'
miRNA:   3'- -GG-CCAGGGGGCgGaacGCGaCGGCCU- -5'
28854 3' -63.9 NC_006146.1 + 8899 0.68 0.502691
Target:  5'- gCCGGUCUCCCaggguGCCUauccaccGUGgaGCCGGu -3'
miRNA:   3'- -GGCCAGGGGG-----CGGAa------CGCgaCGGCCu -5'
28854 3' -63.9 NC_006146.1 + 8997 0.66 0.605411
Target:  5'- gCCGGUCUCCCaCgggGCGUUGCCcaaaagGGAa -3'
miRNA:   3'- -GGCCAGGGGGcGgaaCGCGACGG------CCU- -5'
28854 3' -63.9 NC_006146.1 + 14591 0.66 0.574048
Target:  5'- cCCGGaCCCgCGCCUcuacaucaccucugUGCcCUGCUGGc -3'
miRNA:   3'- -GGCCaGGGgGCGGA--------------ACGcGACGGCCu -5'
28854 3' -63.9 NC_006146.1 + 19508 0.68 0.502691
Target:  5'- gCCGcGccaUCCCCCGCC-UGCaGCaGCgGGAc -3'
miRNA:   3'- -GGC-C---AGGGGGCGGaACG-CGaCGgCCU- -5'
28854 3' -63.9 NC_006146.1 + 33194 0.66 0.624525
Target:  5'- cCCGGgcaCCCCCggggggagGCCggagGgGgaGCCGGGa -3'
miRNA:   3'- -GGCCa--GGGGG--------CGGaa--CgCgaCGGCCU- -5'
28854 3' -63.9 NC_006146.1 + 33362 0.68 0.484767
Target:  5'- cCCGGccacCCCCCGCCggaGCGggGCagCGGAc -3'
miRNA:   3'- -GGCCa---GGGGGCGGaa-CGCgaCG--GCCU- -5'
28854 3' -63.9 NC_006146.1 + 33455 0.68 0.484767
Target:  5'- cCCGGccacCCCCCGCCggaGCGggGCagCGGAc -3'
miRNA:   3'- -GGCCa---GGGGGCGGaa-CGCgaCG--GCCU- -5'
28854 3' -63.9 NC_006146.1 + 33548 0.68 0.484767
Target:  5'- cCCGGccacCCCCCGCCggaGCGggGCagCGGAc -3'
miRNA:   3'- -GGCCa---GGGGGCGGaa-CGCgaCG--GCCU- -5'
28854 3' -63.9 NC_006146.1 + 33641 0.68 0.484767
Target:  5'- cCCGGccacCCCCCGCCggaGCGggGCagCGGAc -3'
miRNA:   3'- -GGCCa---GGGGGCGGaa-CGCgaCG--GCCU- -5'
28854 3' -63.9 NC_006146.1 + 33734 0.68 0.484767
Target:  5'- cCCGGccacCCCCCGCCggaGCGggGCagCGGAc -3'
miRNA:   3'- -GGCCa---GGGGGCGGaa-CGCgaCG--GCCU- -5'
28854 3' -63.9 NC_006146.1 + 33827 0.68 0.484767
Target:  5'- cCCGGccacCCCCCGCCggaGCGggGCagCGGAc -3'
miRNA:   3'- -GGCCa---GGGGGCGGaa-CGCgaCG--GCCU- -5'
28854 3' -63.9 NC_006146.1 + 33920 0.69 0.449878
Target:  5'- cCCGGccaCCCCCGCCggaGCGggGCagCGGAc -3'
miRNA:   3'- -GGCCa--GGGGGCGGaa-CGCgaCG--GCCU- -5'
28854 3' -63.9 NC_006146.1 + 34012 0.68 0.484767
Target:  5'- cCCGGccacCCCCCGCCggaGCGggGCagCGGAc -3'
miRNA:   3'- -GGCCa---GGGGGCGGaa-CGCgaCG--GCCU- -5'
28854 3' -63.9 NC_006146.1 + 34105 0.68 0.484767
Target:  5'- cCCGGccacCCCCCGCCggaGCGggGCagCGGAc -3'
miRNA:   3'- -GGCCa---GGGGGCGGaa-CGCgaCG--GCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.