miRNA display CGI


Results 21 - 40 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28854 3' -63.9 NC_006146.1 + 70189 0.67 0.567439
Target:  5'- gCCGGUcccacacccaCCCCCGCa--GCGCcgggUGCCGaGGg -3'
miRNA:   3'- -GGCCA----------GGGGGCGgaaCGCG----ACGGC-CU- -5'
28854 3' -63.9 NC_006146.1 + 42670 0.67 0.548669
Target:  5'- gCGGcUCgCCCGCggUGgGCUGCCuGAg -3'
miRNA:   3'- gGCC-AGgGGGCGgaACgCGACGGcCU- -5'
28854 3' -63.9 NC_006146.1 + 58283 0.67 0.548669
Target:  5'- aCGGUCUgcugcuCCaCGCCcuucaUGCGCUucGCCGGGg -3'
miRNA:   3'- gGCCAGG------GG-GCGGa----ACGCGA--CGGCCU- -5'
28854 3' -63.9 NC_006146.1 + 34152 0.67 0.546802
Target:  5'- cCCGGagCCCCGgCgaggguggggggUGCGCccccaGCCGGAc -3'
miRNA:   3'- -GGCCagGGGGCgGa-----------ACGCGa----CGGCCU- -5'
28854 3' -63.9 NC_006146.1 + 100694 0.67 0.539356
Target:  5'- gCGG-CCCUCGgCacccgGCGCUGCgGGGg -3'
miRNA:   3'- gGCCaGGGGGCgGaa---CGCGACGgCCU- -5'
28854 3' -63.9 NC_006146.1 + 98398 0.67 0.539356
Target:  5'- uCCGcUCCUCCGCag-GCGCUGCagccaggcaCGGGg -3'
miRNA:   3'- -GGCcAGGGGGCGgaaCGCGACG---------GCCU- -5'
28854 3' -63.9 NC_006146.1 + 8899 0.68 0.502691
Target:  5'- gCCGGUCUCCCaggguGCCUauccaccGUGgaGCCGGu -3'
miRNA:   3'- -GGCCAGGGGG-----CGGAa------CGCgaCGGCCu -5'
28854 3' -63.9 NC_006146.1 + 19508 0.68 0.502691
Target:  5'- gCCGcGccaUCCCCCGCC-UGCaGCaGCgGGAc -3'
miRNA:   3'- -GGC-C---AGGGGGCGGaACG-CGaCGgCCU- -5'
28854 3' -63.9 NC_006146.1 + 34477 0.68 0.484767
Target:  5'- cCCGGccacCCCCCGCCggaGCGggGCagCGGAc -3'
miRNA:   3'- -GGCCa---GGGGGCGGaa-CGCgaCG--GCCU- -5'
28854 3' -63.9 NC_006146.1 + 33548 0.68 0.484767
Target:  5'- cCCGGccacCCCCCGCCggaGCGggGCagCGGAc -3'
miRNA:   3'- -GGCCa---GGGGGCGGaa-CGCgaCG--GCCU- -5'
28854 3' -63.9 NC_006146.1 + 33455 0.68 0.484767
Target:  5'- cCCGGccacCCCCCGCCggaGCGggGCagCGGAc -3'
miRNA:   3'- -GGCCa---GGGGGCGGaa-CGCgaCG--GCCU- -5'
28854 3' -63.9 NC_006146.1 + 34570 0.68 0.484767
Target:  5'- cCCGGccacCCCCCGCCggaGCGggGCagCGGAc -3'
miRNA:   3'- -GGCCa---GGGGGCGGaa-CGCgaCG--GCCU- -5'
28854 3' -63.9 NC_006146.1 + 35313 0.68 0.484767
Target:  5'- cCCGGccacCCCCCGCCggaGCGggGCagCGGAc -3'
miRNA:   3'- -GGCCa---GGGGGCGGaa-CGCgaCG--GCCU- -5'
28854 3' -63.9 NC_006146.1 + 35220 0.68 0.484767
Target:  5'- cCCGGccacCCCCCGCCggaGCGggGCagCGGAc -3'
miRNA:   3'- -GGCCa---GGGGGCGGaa-CGCgaCG--GCCU- -5'
28854 3' -63.9 NC_006146.1 + 35127 0.68 0.484767
Target:  5'- cCCGGccacCCCCCGCCggaGCGggGCagCGGAc -3'
miRNA:   3'- -GGCCa---GGGGGCGGaa-CGCgaCG--GCCU- -5'
28854 3' -63.9 NC_006146.1 + 35034 0.68 0.484767
Target:  5'- cCCGGccacCCCCCGCCggaGCGggGCagCGGAc -3'
miRNA:   3'- -GGCCa---GGGGGCGGaa-CGCgaCG--GCCU- -5'
28854 3' -63.9 NC_006146.1 + 34941 0.68 0.484767
Target:  5'- cCCGGccacCCCCCGCCggaGCGggGCagCGGAc -3'
miRNA:   3'- -GGCCa---GGGGGCGGaa-CGCgaCG--GCCU- -5'
28854 3' -63.9 NC_006146.1 + 34849 0.68 0.484767
Target:  5'- cCCGGccacCCCCCGCCggaGCGggGCagCGGAc -3'
miRNA:   3'- -GGCCa---GGGGGCGGaa-CGCgaCG--GCCU- -5'
28854 3' -63.9 NC_006146.1 + 34756 0.68 0.484767
Target:  5'- cCCGGccacCCCCCGCCggaGCGggGCagCGGAc -3'
miRNA:   3'- -GGCCa---GGGGGCGGaa-CGCgaCG--GCCU- -5'
28854 3' -63.9 NC_006146.1 + 34663 0.68 0.484767
Target:  5'- cCCGGccacCCCCCGCCggaGCGggGCagCGGAc -3'
miRNA:   3'- -GGCCa---GGGGGCGGaa-CGCgaCG--GCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.