miRNA display CGI


Results 41 - 60 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28854 5' -52.5 NC_006146.1 + 71643 0.69 0.935523
Target:  5'- cGUGCGGgaagGCGGCgAGGgaagGAaGAAGCc -3'
miRNA:   3'- cCACGUCaa--CGUCG-UCCa---CUgCUUCG- -5'
28854 5' -52.5 NC_006146.1 + 74033 0.69 0.930383
Target:  5'- cGGaUGCAGUcuCGGCGGcUGACGcGGCa -3'
miRNA:   3'- -CC-ACGUCAacGUCGUCcACUGCuUCG- -5'
28854 5' -52.5 NC_006146.1 + 77912 0.68 0.940415
Target:  5'- aGGcGCAGggGCGggcggccucGCAGGUGcCGggGg -3'
miRNA:   3'- -CCaCGUCaaCGU---------CGUCCACuGCuuCg -5'
28854 5' -52.5 NC_006146.1 + 83188 0.68 0.944608
Target:  5'- aGGUGCA---GCAGCugggagaGGGUGGCuauGGAGCc -3'
miRNA:   3'- -CCACGUcaaCGUCG-------UCCACUG---CUUCG- -5'
28854 5' -52.5 NC_006146.1 + 88074 0.66 0.981024
Target:  5'- cGGUGCAGUUGCAcccGUGGucaugcuaucuuGUaACGggGUa -3'
miRNA:   3'- -CCACGUCAACGU---CGUC------------CAcUGCuuCG- -5'
28854 5' -52.5 NC_006146.1 + 89461 0.72 0.836595
Target:  5'- aGGUGCagcgggaguuuucugGGUUGCgGGUAaccGGUGAgGAGGCa -3'
miRNA:   3'- -CCACG---------------UCAACG-UCGU---CCACUgCUUCG- -5'
28854 5' -52.5 NC_006146.1 + 90027 0.67 0.9647
Target:  5'- aGGUGCAGggggaagcggUGgAGCAGGagguggugcugGAgGGAGCc -3'
miRNA:   3'- -CCACGUCa---------ACgUCGUCCa----------CUgCUUCG- -5'
28854 5' -52.5 NC_006146.1 + 90081 0.72 0.797877
Target:  5'- cGGUGCAGgggggaGCAGUggAGGcaGCGGAGCa -3'
miRNA:   3'- -CCACGUCaa----CGUCG--UCCacUGCUUCG- -5'
28854 5' -52.5 NC_006146.1 + 90114 0.7 0.907338
Target:  5'- aGGagGCAGUggaGCAGgAGGcaGCGGAGCa -3'
miRNA:   3'- -CCa-CGUCAa--CGUCgUCCacUGCUUCG- -5'
28854 5' -52.5 NC_006146.1 + 90196 0.69 0.919357
Target:  5'- aGUGCAGgggGCAGaGGGggaagagGAgGAGGCg -3'
miRNA:   3'- cCACGUCaa-CGUCgUCCa------CUgCUUCG- -5'
28854 5' -52.5 NC_006146.1 + 91103 0.66 0.981024
Target:  5'- --gGCAGUgGCAGCggagggaggugaGGGUGcCGAGGg -3'
miRNA:   3'- ccaCGUCAaCGUCG------------UCCACuGCUUCg -5'
28854 5' -52.5 NC_006146.1 + 93887 0.71 0.864758
Target:  5'- aGGgggGCGGaauUUGCGGCAGGgggGGCcagcacgGAGGCg -3'
miRNA:   3'- -CCa--CGUC---AACGUCGUCCa--CUG-------CUUCG- -5'
28854 5' -52.5 NC_006146.1 + 98408 0.66 0.984946
Target:  5'- --cGCAGgcgcUGCAGcCAGGcacGGgGAAGCg -3'
miRNA:   3'- ccaCGUCa---ACGUC-GUCCa--CUgCUUCG- -5'
28854 5' -52.5 NC_006146.1 + 99144 0.67 0.9647
Target:  5'- ---aCAGggGCuccagcgaccGGCAGGUGGCGGAGg -3'
miRNA:   3'- ccacGUCaaCG----------UCGUCCACUGCUUCg -5'
28854 5' -52.5 NC_006146.1 + 100285 0.72 0.788629
Target:  5'- uGGgGCGGagGCAGCAGaGgccGugGAGGCa -3'
miRNA:   3'- -CCaCGUCaaCGUCGUC-Ca--CugCUUCG- -5'
28854 5' -52.5 NC_006146.1 + 101852 0.67 0.967939
Target:  5'- cGG-GCuGccGCAccaCGGGUGGCGggGCg -3'
miRNA:   3'- -CCaCGuCaaCGUc--GUCCACUGCuuCG- -5'
28854 5' -52.5 NC_006146.1 + 110582 0.69 0.924994
Target:  5'- --aGCGGUUGCGGUGGGUcuCGAccgucaGGCa -3'
miRNA:   3'- ccaCGUCAACGUCGUCCAcuGCU------UCG- -5'
28854 5' -52.5 NC_006146.1 + 110881 0.68 0.945061
Target:  5'- cGGgcuCGGgcGCAgGCGGG-GACGggGCc -3'
miRNA:   3'- -CCac-GUCaaCGU-CGUCCaCUGCuuCG- -5'
28854 5' -52.5 NC_006146.1 + 112735 0.67 0.9647
Target:  5'- cGUGUAca---GGCAGGUGGuCGAGGCg -3'
miRNA:   3'- cCACGUcaacgUCGUCCACU-GCUUCG- -5'
28854 5' -52.5 NC_006146.1 + 112951 0.67 0.973775
Target:  5'- --cGUAGUgGCAGU-GGUGAUGcAGCa -3'
miRNA:   3'- ccaCGUCAaCGUCGuCCACUGCuUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.