miRNA display CGI


Results 21 - 40 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28854 5' -52.5 NC_006146.1 + 45921 0.67 0.9647
Target:  5'- cGGUGaccgUGCcGUAGGUGgACGggGUc -3'
miRNA:   3'- -CCACgucaACGuCGUCCAC-UGCuuCG- -5'
28854 5' -52.5 NC_006146.1 + 46068 0.72 0.833219
Target:  5'- aGUGCcauAGcUGCuGCAGGgccucgggGGCGAAGCa -3'
miRNA:   3'- cCACG---UCaACGuCGUCCa-------CUGCUUCG- -5'
28854 5' -52.5 NC_006146.1 + 47245 0.66 0.986659
Target:  5'- uGGcGCGGgucgacGUGGCcccuggcccGGGUGACGAGGUc -3'
miRNA:   3'- -CCaCGUCaa----CGUCG---------UCCACUGCUUCG- -5'
28854 5' -52.5 NC_006146.1 + 47991 0.67 0.9647
Target:  5'- gGGU-CAGagGUGGCuGGUGGCGGgaGGCu -3'
miRNA:   3'- -CCAcGUCaaCGUCGuCCACUGCU--UCG- -5'
28854 5' -52.5 NC_006146.1 + 50726 0.67 0.976384
Target:  5'- --gGC-GUUG-AGCGGGggcGACGggGCg -3'
miRNA:   3'- ccaCGuCAACgUCGUCCa--CUGCuuCG- -5'
28854 5' -52.5 NC_006146.1 + 51132 1.15 0.002693
Target:  5'- gGGUGCAGUUGCAGCAGGUGACGAAGCg -3'
miRNA:   3'- -CCACGUCAACGUCGUCCACUGCUUCG- -5'
28854 5' -52.5 NC_006146.1 + 52758 0.68 0.953625
Target:  5'- --cGCAGUUGCugacGCAcuGGaugccGGCGAAGCg -3'
miRNA:   3'- ccaCGUCAACGu---CGU--CCa----CUGCUUCG- -5'
28854 5' -52.5 NC_006146.1 + 53844 0.7 0.907338
Target:  5'- aGGUGUGGUcccggagGCGGUAGGcGACGcuGGCc -3'
miRNA:   3'- -CCACGUCAa------CGUCGUCCaCUGCu-UCG- -5'
28854 5' -52.5 NC_006146.1 + 55289 0.68 0.943694
Target:  5'- --cGCGGUggGCAGCAGccggaaaaagugcagGGCGAAGCc -3'
miRNA:   3'- ccaCGUCAa-CGUCGUCca-------------CUGCUUCG- -5'
28854 5' -52.5 NC_006146.1 + 55864 0.68 0.940415
Target:  5'- aGGUGCAGuUUGUggugauuGCAGGacUGACGuguuccugGAGCa -3'
miRNA:   3'- -CCACGUC-AACGu------CGUCC--ACUGC--------UUCG- -5'
28854 5' -52.5 NC_006146.1 + 56354 0.72 0.78863
Target:  5'- cGGaGCAGguaGUAgGCGuGGUGGCGGAGCa -3'
miRNA:   3'- -CCaCGUCaa-CGU-CGU-CCACUGCUUCG- -5'
28854 5' -52.5 NC_006146.1 + 56848 0.7 0.907338
Target:  5'- uGGcgGCGGggGCGGCAGcuuUGGCuGggGCu -3'
miRNA:   3'- -CCa-CGUCaaCGUCGUCc--ACUG-CuuCG- -5'
28854 5' -52.5 NC_006146.1 + 57354 0.69 0.935523
Target:  5'- gGGUGuCGGUgagggaggcUGCGGC-GGUGGCGccgguGGGCu -3'
miRNA:   3'- -CCAC-GUCA---------ACGUCGuCCACUGC-----UUCG- -5'
28854 5' -52.5 NC_006146.1 + 59045 0.67 0.9647
Target:  5'- cGGUGaGGgcGCAGCGGGccgacacgcagGGCGAcgAGCu -3'
miRNA:   3'- -CCACgUCaaCGUCGUCCa----------CUGCU--UCG- -5'
28854 5' -52.5 NC_006146.1 + 59541 0.7 0.887484
Target:  5'- aGGUGgGGgUGCAGCGuGGcGAUGGAGg -3'
miRNA:   3'- -CCACgUCaACGUCGU-CCaCUGCUUCg -5'
28854 5' -52.5 NC_006146.1 + 64180 0.69 0.930383
Target:  5'- uGG-GUGGggGCAGCaggaguugcaAGGUGucGCGGAGCu -3'
miRNA:   3'- -CCaCGUCaaCGUCG----------UCCAC--UGCUUCG- -5'
28854 5' -52.5 NC_006146.1 + 66358 0.7 0.907338
Target:  5'- cGUGCAGggagugaUGCAGCAGGUuuUGAauguugagGGCg -3'
miRNA:   3'- cCACGUCa------ACGUCGUCCAcuGCU--------UCG- -5'
28854 5' -52.5 NC_006146.1 + 68174 0.66 0.978798
Target:  5'- cGG-GCAGgcGCAGCgucAGGacgcgGGCGcAGCg -3'
miRNA:   3'- -CCaCGUCaaCGUCG---UCCa----CUGCuUCG- -5'
28854 5' -52.5 NC_006146.1 + 68743 0.67 0.9647
Target:  5'- gGGUGguGgagGCc-CAGGUGGCcAAGCu -3'
miRNA:   3'- -CCACguCaa-CGucGUCCACUGcUUCG- -5'
28854 5' -52.5 NC_006146.1 + 69356 0.67 0.96794
Target:  5'- aGGUGguGuUUGUGG-AGGUaGACGAgcuGGCa -3'
miRNA:   3'- -CCACguC-AACGUCgUCCA-CUGCU---UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.